Table 2

SNPs in the candidate genes significantly associated with mean FHB rating or DON content

Trait/Candidate gene

SNP #

Positiona

Polymorphism

Changes in amino acidsb

P-value

pG (%)c


Mean FHB rating (%)

MetAP1

SNP 05

904

A, G

H, R

1.28 × 10-4

25.6

SNP 03

909

A, C

T, P

1.94 × 10-4

0.5

Erf2

SNP 47

1424

C, T

Q, Stop

6.61 × 10-4

13.1

DON production (mg kg-1)

TRI1

SNP 23

851

A, G

R, Q

8.62 × 10-3

4.4


a The position is relative to the start codon (ATG)

b Different amino acids coded by SNPs located in exon regions (non-synonymous SNPs)

c The proportion of explained genotypic variance in percent (pG) after Bonferroni-Holm procedure

Talas et al. BMC Genetics 2012 13:14   doi:10.1186/1471-2156-13-14

Open Data