Table 1

Sequenced regions of candidate genes and its related nucleotide polymorphism

Gene IDa

Sequenced region relative to the ATG

No. of SNPs detected

No. of singletons

Nucleotide diversity (%)b

No. of SNPs with allele frequency > 0.1


TRI1 (FGSG_00071)

311-1065

73

54

2.5

3

TRI6 (FGSG_16251)

35-558

36

29

1.3

0

TRI5 (FGSG_03537)

479-1080

70

38

5.3

4

TRI10 a (FGSG_03538)

31-678

123

80

6.6

0

TRI10 b (FGSG_03538)

760-1273

34

29

0.9

1

TRI14 (FGSG_03543)

277-976

43

23

2.9

0

MetAP1 (FGSG_01397)

200-934

106

41

8.8

25

Erf2 (FGSG_08531)

1193-1825

80

42

6.0

11


a The given gene ID is the entry number of the MIPS F. graminearum genome database (FGDB; Wong et al. 2011)

b Nucleotide diversity is the frequency of SNPs (without singletons) relative to the total length of the sequenced gene region

Talas et al. BMC Genetics 2012 13:14   doi:10.1186/1471-2156-13-14

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