Comparison of the sensitivity of multiple systems on GWAS data using the LD-gene mapping search space for the MHS set. CMP and CPS are Gentrepid methods. PUB, PUB2, GO-G, and HEA are GRAIL methods. PUB refers to PubMed abstracts up until 2006. PUB2 refers to PubMed abstracts up until 2011. GO-G refers to the gene ontology GRAIL method. HEA refers to the human expression atlas. GO-W, KEGG, WIKI, PATHS, PPI, TF and MIR refer to the methods of WebGestalt. GO-W refers to gene ontology enrichment. KEGG refers to pathway enrichment from the KEGG database. WIKI refers to pathway enrichment from Wikipathways. PATHS refers to pathway enrichment from Pathway Commons. PPI refers to protein interaction enrichment. TF refers to transcription factor enrichment. MIR refers to microRNA enrichment. CPS has the most consistent results.
Ballouz et al. BMC Genetics 2011 12:98 doi:10.1186/1471-2156-12-98