Table 4

Power of assignment in individual breeds

Delta

pairwise Wright's FST

pairwise W&C's FST

PCA


Breed

Markers

log0

log1

log2

log3

log0

log1

log2

log3

log0

log1

log2

log3

log0

log1

log2

log3


Angus

50

100

79.17

66.67

33.33

85.4

64.58

43.75

18.75

93.8

81.25

37.5

16.67

85.4

68.75

52.08

20.83

100

100

91.67

77.08

72.92

97.9

91.67

89.58

87.5

100

100

95.83

91.67

89.6

79.17

77.08

60.42

200

100

100

100

100

100

100

100

100

100

100

97.92

97.92

100

97.92

97.92

97.92

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

97.92

97.92

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Brown Swiss

50

100

95.8

95.8

95.8

100

100

100

95.8

100

100

100

91.7

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

200

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Charolais

50

72

56

24

0

92

76

60

24

92

60

44

16

88

68

20

4

100

88

76

56

24

96

96

84

60

96

88

80

44

92

92

84

52

200

96

96

96

92

96

96

92

92

96

96

96

92

96

96

92

84

300

100

96

96

96

96

96

96

92

96

96

96

96

96

96

96

96

400

100

96

96

96

96

96

96

96

96

96

96

96

96

96

96

96


Finnish Ayrshire

50

100

60

20

10

100

90

60

40

70

70

60

50

100

100

70

40

100

100

100

90

90

100

90

80

50

90

90

80

50

100

100

100

80

200

100

100

100

100

100

100

100

80

100

100

100

90

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Guernsey

50

100

100

95.2

95.2

95.2

95.2

95.2

95.2

100

95.2

95.2

95.2

95.2

95.2

95.2

95.2

100

100

100

100

95.2

100

100

100

100

100

100

100

100

95.2

95.2

95.2

95.2

200

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Hereford

50

68

60

36

24

92

80

60

48

100

92

84

68

96

88

76

72

100

100

88

88

84

100

100

96

84

100

100

100

96

100

100

100

100

200

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Holstein

50

96

72

48

24

92

72

64

40

96

96

96

96

96

96

88

84

100

100

96

96

92

100

100

100

100

100

100

92

88

100

100

92

92

200

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Jersey

50

100

100

100

92.9

100

100

100

100

100

100

100

100

100

100

100

96.4

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

200

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Limousin

50

92

84

56

40

96

92

84

48

88

80

72

44

84

60

20

12

100

100

100

96

76

100

92

88

84

88

88

72

72

92

92

72

48

200

100

100

100

100

100

100

100

96

92

92

92

92

100

100

100

100

300

100

100

96

96

100

96

96

96

96

96

96

92

100

100

100

100

400

100

100

100

100

100

96

96

96

100

96

96

96

100

100

100

100


Norwegian Red

50

90.5

71.4

61.9

33.3

90.5

71.4

57.1

28.6

90.5

81

71.4

57.1

85.7

76.2

61.9

28.6

100

100

95.2

90.5

85.7

95.2

90.5

85.7

76.2

90.5

90.5

76.2

71.4

95.2

95.2

90.5

85.7

200

100

100

100

100

100

100

100

95.2

100

100

100

95.2

95.2

100

100

95.2

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Piedmontese

50

100

94.7

94.7

78.9

100

100

100

94.7

100

94.7

94.7

73.7

94.7

84.2

73.7

47.4

100

100

100

100

94.7

100

100

100

100

100

100

100

100

94.7

94.7

94.7

68.4

200

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Red Angus

50

93

73.3

46.7

26.7

86.7

53.3

33.3

20

80

53.3

46.7

13.3

93.3

53.3

46.7

20

100

93

80

66.7

60

86.7

86.7

80

66.7

100

93.3

93.3

73.3

93.3

80

73.3

60

200

93

93.3

93.3

93.3

100

100

100

93.3

100

100

93.3

93.3

100

93.3

80

80

300

100

100

100

100

100

100

100

100

100

100

100

100

100

86.7

86.7

86.7

400

100

100

100

100

100

100

100

100

100

100

100

100

100

93.3

93.3

93.3


Red Poll

50

88.9

88.9

83.3

72.2

100

100

83.3

77.8

94.4

88.9

77.8

66.7

100

94.4

94.4

94.4

100

100

100

100

100

100

100

100

94.4

100

100

100

100

100

100

100

100

200

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

300

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Shorthorn

50

80

76

68

56

92

92

92

80

92

92

92

88

96

92

80

80

100

92

88

88

88

92

92

92

88

96

96

92

92

100

96

96

92

200

96

96

92

92

100

96

96

96

100

96

96

96

100

100

100

100

300

96

100

100

100

100

96

96

96

100

96

96

96

100

100

100

100

400

100

100

100

96

100

100

100

100

100

100

100

100

100

100

100

100


Simmental

50

100

92

68

36

92

92

80

60

96

84

68

40

88

68

44

32

100

100

92

84

80

96

100

96

96

100

100

88

76

92

92

76

56

200

100

100

100

96

100

100

100

100

100

100

96

92

92

88

76

68

300

100

100

100

96

100

100

100

100

100

96

96

96

96

92

88

76

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

96

92


Welsh Black

50

100

100

93.3

76.7

96.7

93.3

83.3

80

100

96.7

90

83.3

96.7

96.7

90

83.3

100

100

100

100

100

96.7

93.3

93.3

93.3

100

100

100

100

96.7

96.7

96.7

96.7

200

100

100

100

100

100

100

100

100

100

100

100

96.7

100

100

96.7

96.7

300

100

100

100

100

100

100

100

100

100

100

100

100

100

96.7

96.7

96.7

400

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100

100


Percentage of individuals that were successfully assigned to their breed origin, at the 4 stringency threshold levels, for each selection method.

Wilkinson et al. BMC Genetics 2011 12:45   doi:10.1186/1471-2156-12-45

Open Data