Table 2

Comparison of the SNP selection methods

delta

Global Wright's FST

Pairwise Wright's FST

Global W&C'S FST

Pairwise W&C'S FST

PCA [1:8]


delta

0.589

0.884

0.370

0.819

0.928

global Wright's FST

98

0.847

0.462

0.821

0.682

pairwise Wright's FST

381

151

0.448

0.952

0.888

global W&C FST

59

49

63

0.461

0.408

pairwise W&C FST

306

156

367

67

0.810

PCA [1:8]

273

101

274

66

229


The upper-triangle contains the Spearman rank's correlation results between each 40,483 SNPs ranked for information content by each selection method. The lower-triangle contains the amount of overlap for the top 500 ranked SNP markers between each selection method.

Wilkinson et al. BMC Genetics 2011 12:45   doi:10.1186/1471-2156-12-45

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