Table 3

Putative functions of polymorphic EST-SSR markers, as determined by BLASTX

Locus

Chrom

Sequence ID1

Top E-value

Species

Putative gene function


PVEST008

-

ALV_007_B10_G1

7E-40

A. thaliana

Lsd One Like 1

PVEST026

7B

ALV_012C_E03_B1

1E-35

V. vinifera

Hypothetical protein

PVEST029

4

ALV_013C_A09_B1

7E-23

P. vulgaris

Ribulose bisphosphate carboxylase

PVEST042

3

ALV_014C_G08_B1

4E-67

G. max

Plastid 3-keto-acyl-ACP synthase II-B

PVEST049

10

ALV_015A_G09_B1

1E-104

M. truncatula

Cytochrome P450 monooxygenase

PVEST061

7B

ALV_017A_E11_B1

1E-51

P. sativum

DNA-binding protein DF1

PVEST071

11B

Contig1282

7E-35

PVPR3

PVPR3

PVEST072

6

Contig1299

1E-52

M. truncatula

Ferric reductase-like transmembrane component

PVEST073

9

Contig1338

1E-105

G. hirsutum

Small GTPase

PVEST086

4

Contig1621

4E-18

V. vinifera

Hypothetical protein

PVEST099

10

Contig1916

2E-39

M. truncatula

Protein of unknown function DUF581

PVEST101

7B

Contig1984

8E-13

P. sativum

Drm4

PVEST114

8

Contig2442

1E-92

A. thaliana

NLI interacting factor (NIF)

PVEST134

-

Contig2970

1E-137

P. montana

Isopentenyl pyrophosphate isomerase

PVEST147

-

Contig03274

2E-83

A. thaliana

Constitutive Disease Resistance 1

PVEST155

-

Contig0520

4E-61

A. thaliana

Sterol-C-methyltransferase

PVEST158

-

Contig0551

9E-20

A. thaliana

Unknown protein

PVEST166

-

Contig0802

1E-32

A. thaliana

kinesin-like protein

PVEST176

-

LVS_010_H04_b2

6E-46

A. thaliana

Postsynaptic protein-related

PVEST186

7B

LVS_040_F02_b1

2E-90

V. vinifera

Hypothetical protein

PVEST188

-

LVS_042_C11_b1

3E-19

A. corniculatum

Aquaporin 1

PVEST198

2

NOD_217_A08_053

3E-36

A. thaliana

Leucine-rich repeat family protein

PVEST204

8

NOD_223_E06_040

1E-68

A. thaliana

Hypothetical protein

PVEST205

11B

NOD_225_C03_019

3E-58

A. thaliana

Unnamed protein product

PVEST207

5

NOD_230_E11_084

2E-24

A. thaliana

ATOFP14/OFP14 - ovate family protein 14

PVEST227

-

POD_036_B08_061

4E-35

M. truncatula

Hypothetical protein MtrDRAFT_AC160516g6v2

PVEST229

2

POD_039_G09_068

3E-61

A. thaliana

Putative ABC transporter

PVEST230

3

POD_040_B03_025

5E-23

A. thaliana

Putative ATPase (ISW2)

PVEST232

3

PVEPSE2003D01

5E-25

A. thaliana

Unknown protein

PVEST245

1B

PVEPSE2022F10

1E-62

V. unguiculata

Patatin-like protein

PVEST249

-

PVEPSE2030D05

1E-13

M. truncatula

Alpha-6-galactosyltransferase

PVEST251

7B

PVEPSE2032A08

1E-24

A. thaliana

Zinc Finger Protein 8

PVEST253

-

PVEPSE3007B09

1E-17

P. vulgaris

Cytochrome f

PVEST260

-

PVEPSE3030P01

3E-71

P. vulgaris

DnaJ-like protein

PVEST289

-

Contig0145

7E-45

R. palustris

Expansin 11 precursor

PVEST292

-

Contig1625

1E-104

M. truncatula

CBS

PVEST293

5

Contig1723

1E-99

R. communis

NADP-dependent malic protein

PVEST304

7B

Contig2620

3E-78

A. thaliana

Unknown protein

PVEST308

-

Contig3013

1E-121

V. radiata

ARG10

PVEST321

1B

Contig0673

2E-19

V. vinifera

Hypothetical protein

PVEST323

-

Contig0073

5E-41

V. vinifera

Hypothetical protein

PVEST326

6

Contig0863

5E-79

L. esculentum

Type 5 protein serine/threonine phosphatase 62 kDa isoform

PVEST336

8

ALV_011A_G01_B1

4E-53

A. thaliana

ATNSI (Nuclear Shuttle Interacting)

PVEST355

2

NOD_243_H08_064

6E-65

M. truncatula

Protein of unknown function DUF6, transmembrane


List of SSR markers indicating the position on the Phaseolus vulgaris linkage map, the sequence identity from which the SSRs were derived and the BLASTX results.

1For additional details, see the references [30] and [50].

Garcia et al. BMC Genetics 2011 12:41   doi:10.1186/1471-2156-12-41

Open Data