Table 1

Genetic characterization of the 102 genomic SSRs in common beans

Locus

p(1)

Na

Ho

PIC

Transf. species(2)


AG1

0.563

5

0.563

0.551

2,3,4,5,6, 7

AJ416389

0.714

3

0.000

0.406

-

AJ416391

0.667

2

0.000

0.346

-

AJ416395

-

-

-

-

-

BM003

-

-

-

-

2, 4

BM006

-

-

-

-

3, 4

BM016

-

-

-

-

1,2,3, 4

BM020

-

-

-

-

-

BM068

0.500

3

0.000

0.456

2, 4

BM098

0.688

2

0.000

0.337

1,2,3,4,5,6,7,8,9, 10

BM114

0.538

4

0.000

0.576

-

BM137

0.200

9

0.000

0.857

3

BM138

0.571

2

0.000

0.370

-

BM140

0.875

3

0.000

0.215

1,2, 4

BM142

-

-

-

-

2,3,4, 7

BM143

0.200

10

0.000

0.868

2, 4

BM146

-

-

-

-

2,3,4,5, 7

BM148

-

-

-

-

2,3,4, 7

BM149

0.813

2

0.000

0.258

2,4,5, 6

BM151

0.600

3

0.000

0.499

2,3, 4

BM153

-

-

-

-

-

BM154

0.250

9

0.000

0.835

2, 4

BM155

0.667

3

0.000

0.438

4

BM157

0.733

2

0.000

0.315

1,2,3,7, 8

BM158

0.417

6

0.000

0.719

3

BM159

0.625

3

0.000

0.468

4

BM160

0.625

6

0.000

0.553

2, 4

BM161

-

-

-

-

2,3,5,6, 7

BM164

0.688

3

0.000

0.427

2,3,4,7, 10

BM165

0.667

2

0.000

0.346

-

BM166

-

-

-

-

2,4, 5

BM167

0.500

3

0.000

0.511

3,4, 7

BM175

0.667

4

0.000

0.462

4, 5

BM181

0.500

2

0.000

0.375

2, 4

BM183

0.438

5

0.000

0.657

2,3,4

BM184

0.571

3

0.000

0.501

-

BM185

0.313

4

0.000

0.675

1,2,3,4,5,7, 8

BM187

0.125

11

0.000

0.889

1,2,3, 4

BM189

0.500

4

0.000

0.570

2, 4

BM197

0.625

3

0.000

0.468

2,3,4,5,6,7, 8

BM200

0.286

7

0.000

0.768

2, 4

BM201

0.375

4

0.000

0.658

2, 4

BM202

0.714

2

0.000

0.325

2, 3, 4

BM205

0.375

5

0.000

0.711

-

BM210

0.385

4

0.000

0.613

2, 4

BM211

0.286

7

0.000

0.792

2, 4

BM212

0.444

4

0.000

0.607

-

GATs11B

0.625

2

0.000

0.359

4

GATs54

0.571

2

0.000

0.370

2

PV005

0.375

6

0.000

0.712

-

PV011

0.375

4

0.000

0.636

2, 4

PV012

0.688

2

0.000

0.337

2, 4

PV013

0.462

7

0.000

0.709

-

PV025

0.200

7

0.000

0.825

2, 4

PV035

0.600

5

0.000

0.562

2, 4

PV038

0.500

2

0.000

0.375

-

PV051

-

-

-

-

2,3,4,5, 7

PV053

0.733

3

0.000

0.388

2,3, 4

PV055

0.367

5

0.467

0.699

2, 4

PV060

0.364

6

0.000

0.726

2,3, 4

PV067

0.400

4

0.000

0.624

-

PV077

0.800

3

0.000

0.309

2,3, 4

PV080

-

-

-

-

1,2,3, 4

PV087

0.625

5

0.000

0.539

2, 4

PV096

-

-

-

-

3

PV097

0.333

5

0.000

0.738

2,3,5,6, 7

PV101

-

-

-

-

8

PV102

0.462

3

0.000

0.566

-

PV105

-

-

-

-

-

PV112

0.625

3

0.000

0.428

2,3, 4

PV113

0.533

3

0.000

0.456

2, 4

PV118

0.688

2

0.000

0.337

2, 4

PV131

-

-

-

-

4

PV140

-

-

-

-

2,3,4,5,7,8, 10

PV148

-

-

-

-

3

PV162

-

-

-

-

2

PV163

0.333

7

0.000

0.775

2 e 4

PV168

0.667

2

0.000

0.346

2, 4

PV169

0.455

4

0.000

0.623

-

PV174

-

-

-

-

2 e 4

PV180

-

-

-

-

2, 4

PV193

0.500

3

0.000

0.544

PV194

-

-

-

-

1,2, 3

PV198

0.583

2

0.000

0.368

1,2, 3

PV200

-

-

-

-

-

PV202

-

-

-

-

2,3,4, 8

PV204

-

-

-

-

3

PV207

-

-

-

-

3

PV215

-

-

-

-

-

PV221

-

-

-

-

-

PV231

-

-

-

-

2, 4

PV237

0.844

2

0.313

0.229

3

PV243

-

-

-

-

2,3,4,5, 7

PV251

-

-

-

-

1,2,3,4, 7

PV254

-

-

-

-

-

PV258

0.813

2

0.375

0.258

4

PV259

0.500

2

0.000

0.375

-

PV265

0.813

2

0.000

0.258

-

PV268

-

-

-

-

-

PV270

0.636

2

0.000

0.356

2, 4

PV272

0.250

8

0.000

0.825

3

PV243

0.250

7

0.000

0.812

-


Detailed information of the allele frequency (p) average over locus, the number of alleles per locus (Na), the observed heterozygosity (Ho), the polymorphism information content (PIC) and the species for which the SSRs were transferable.

(1)Average allele frequency

(2) Transferable species: 1- Medicago sativa; 2- Phaseolus lunatus; 3- P. coccineus; 4- P. acutifolius; 5- Vigna mungo; 6- V. angularis; 7-V. unguiculata; 8- Glicine max; 9- Arachis hypogaea; 10- Dipteryx alata.

Garcia et al. BMC Genetics 2011 12:41   doi:10.1186/1471-2156-12-41

Open Data