Table 2

Means and standard deviations of the untransformed skatole levels (ng/g of fat) for selected significant SNP markers on SSC6

SNP

Genotype

N

Mean

Standard Deviation

Explained phenotypic variance


TT

224

74.7

78.0

MARC0019446

GT

457

89.1

90.5

0.06 ± 0.06

GG

185

114.6

125.1

GG

507

78.9

85.6

ALGA0107039

GT

335

101.8

100.5

0.19 ± 0.16

TT

39

181.7

174.0

AA

496

76.4

79.5

ALGA0034369

AG

329

101.6

103.1

0.22 ± 0.18

GG

54

165.8

150.8

GG

208

88.9

109.2

MARC0009863

AG

456

86.3

85.6

0.04 ± 0.03

AA

200

103.9

102.3

TT

242

100.2

99.4

ALGA0113531

GT

464

85.9

86.7

0.03 ± 0.02

GG

153

93.3

121.2


The most significant SNP in each of the three clusters identified on SSC6 is listed. The phenotypic variance explained by the SNPs is given with the standard error of the estimate.

Ramos et al. BMC Genetics 2011 12:35   doi:10.1186/1471-2156-12-35

Open Data