Table 1

Summary counts of Pinus taeda marker evaluation and mapping results

Marker type

SSR eval 1

base seg2

qtl seg2

Total seg2

base map3

qtl map3

Both map4

Rnd 3 integ map5

Rnd 2 integ map6


genomic SSR

804

138

134

168

121

113

86

149

133

EST SSR

873

72

70

97

61

60

37

84

78

ESTP

n/a

69

104

159

49

65

10

104

98

RFLP

n/a

56

139

166

44

100

21

123

120

total

1677

335

447

590

275

338

154

460

429


n/a - not applicable.

1 SSR primer pairs that were evaluated.

2 Markers that segregated in the base pedigree, qtl pedigree, and either (Total seg).

3 Markers in the respective pedigree maps used for map integration.

4 Markers common to both base and qtl pedigrees and used for map integration.

5 Non-redundant marker loci in the round-3 integrated map, which included ancillary markers, as listed in Additional File 2.

6 Non-redundant marker loci in the round-2 integrated map, which excluded ancillary markers, as shown in Figure 1 and listed in Additional file 5.

Echt et al. BMC Genetics 2011 12:17   doi:10.1186/1471-2156-12-17

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