Table 1 |
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|
Position and significance level of growth trait QTL. |
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|
Chr1 |
Position2 |
Trait |
Type3 |
-log10P4 |
FDR5 |
Flanking Markers |
Additive6 |
Dominance7 |
|
|
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|
4 |
25 |
22-wk total body fat tissue, kg |
HS |
3.17 |
0.0484 |
SW2509 - S0301 |
||
|
42 |
22-wk 10th-rib backfat, mm |
HS |
3.65 |
0.0209 |
S0301 - SW871 |
|||
|
57 |
22-wk LM area, cm2 |
LC |
3.29 |
0.0351 |
S0301 - SW871 |
-1.10 (0.29) |
-0.66 (0.51) |
|
|
65 |
16-wk last-rib backfat, mm |
HS |
3.97 |
0.0120 |
S0301 - SW871 |
|||
|
6 |
25 |
22-wk empty body lipid, kg |
HS |
3.76 |
0.0179 |
S0099 - SW2406 |
||
|
26 |
22-wk total body fat tissue, kg |
HS |
3.29 |
0.0398 |
S0099 - SW2406 |
|||
|
129 |
22-wk fat-free total lean, kg |
LC |
5.30 |
0.0006 |
S0220 - SW122 |
-0.35 (0.09) |
0.44 (0.14) |
|
|
129 |
22-wk empty body protein, kg |
LC |
4.85 |
0.0016 |
S0220 - SW122 |
-0.13 (0.03) |
0.14 (0.05) |
|
|
164 |
13-wk 10th-rib backfat, mm |
LC |
21.81 |
0.0000 |
SW1647 - SW1881 |
0.98 (0.10) |
-0.74 (0.15) |
|
|
164 |
22-wk 10th-rib backfat, mm |
LC |
18.49 |
0.0000 |
SW1647 - SW1881 |
2.17 (0.25) |
-1.37 (0.36) |
|
|
164 |
22-wk last-rib backfat, mm |
LC |
22.25 |
0.0000 |
SW1647 - SW1881 |
1.55 (0.17) |
-1.24 (0.24) |
|
|
165 |
10-wk 10th-rib backfat, mm |
LC |
22.90 |
0.0000 |
SW1647 - SW1881 |
0.70 (0.07) |
-0.57 (0.11) |
|
|
165 |
13-wk last-rib backfat, mm |
LC |
21.85 |
0.0000 |
SW1647 - SW1881 |
0.58 (0.06) |
-0.39 (0.09) |
|
|
165 |
16-wk last-rib backfat, mm |
LC |
22.26 |
0.0000 |
SW1647 - SW1881 |
0.86 (0.10) |
-0.81 (0.14) |
|
|
166 |
10-wk last-rib backfat, mm |
LC |
20.30 |
0.0000 |
SW1647 - SW1881 |
0.43 (0.05) |
-0.30 (0.07) |
|
|
166 |
19-wk last-rib backfat, mm |
LC |
27.25 |
0.0000 |
SW1647 - SW1881 |
1.32 (0.13) |
-1.03 (0.18) |
|
|
168 |
22-wk total body fat tissue, kg |
LC |
4.69 |
0.0023 |
SW1881 - SW322 |
0.57 (0.13) |
-0.38 (0.19) |
|
|
169 |
19-wk 10th-rib backfat, mm |
LC |
25.29 |
0.0000 |
SW1881 - SW322 |
1.78 (0.18) |
-1.61 (0.27) |
|
|
172 |
16-wk 10th-rib backfat, mm |
LC |
23.45 |
0.0000 |
SW1881 - SW322 |
1.38 (0.14) |
-0.97 (0.22) |
|
|
174 |
22-wk empty body lipid, kg |
LC |
8.61 |
0.0000 |
SW1881 - SW322 |
0.46 (0.09) |
-0.50 (0.14) |
|
|
229 |
22-wk fat-free total lean, kg |
HS |
3.38 |
0.0343 |
SW607 - SW2419 |
|||
|
7 |
44 |
10-wk LM area, cm2 |
HS |
3.41 |
0.0325 |
S0064 - SW1369 |
||
|
48 |
19-wk LM area, cm2 |
HS |
4.78 |
0.0024 |
S0064 - SW1369 |
|||
|
138 |
19-wk LM area, cm2† |
LC |
5.02 |
0.0011 |
SW859 - SW2040 |
-1.38 (0.29) |
-0.55 (0.62) |
|
|
169 |
10-wk LM area, cm2† |
LC |
3.51 |
0.0236 |
SW2040 - S0115 |
-0.43 (0.11) |
0.05 (0.16) |
|
|
185 |
13-wk LM area, cm2† |
LC |
3.22 |
0.0391 |
S0115 - SW632 |
-0.49 (0.13) |
0.26 (0.20) |
|
|
8 |
137 |
22-wk empty body lipid, kg |
HS |
3.30 |
0.0397 |
S0017 - SW2160 |
||
|
9 |
7 |
22-wk body weight, kg† |
LC |
3.10 |
0.0485 |
SW21 - SW983 |
-0.52 (0.71) |
4.12 (1.10) |
|
9 |
22-wk empty body lipid, kg |
CB |
3.55 |
0.0433 |
SW21 - SW983 |
|||
|
12 |
19-wk body weight, kg |
CB |
3.78 |
0.0297 |
SW21 - SW983 |
|||
|
11 |
91 |
19-wk last-rib backfat, mm |
LC |
3.98 |
0.0093 |
S0230 - SW66 |
0.20 (0.19) |
-1.11 (0.27) |
|
93 |
19-wk 10th-rib backfat, mm |
LC |
3.37 |
0.0307 |
S0230 - SW66 |
-0.63 (0.28) |
-1.28 (0.41) |
|
|
106 |
22-wk empty body lipid, kg |
LC |
3.28 |
0.0356 |
S0230 - SW66 |
-0.22 (0.15) |
-1.03 (0.29) |
|
|
15 |
39 |
16-wk LM area, cm2† |
LC |
3.19 |
0.0413 |
S0148 - SW1989 |
-0.75 (0.19) |
0.05 (0.30) |
|
69 |
19-wk LM area, cm2† |
LC |
3.28 |
0.0356 |
S0088 - SW1683 |
-0.86 (0.22) |
-0.01 (0.35) |
|
|
74 |
22-wk 10th-rib backfat, mm |
HS |
4.43 |
0.0048 |
SW1683 - SW906 |
|||
|
96 |
19-wk 10th-rib backfat, mm |
HS |
4.38 |
0.0053 |
SW1983 - SW1119 |
|||
|
16 |
93 |
22-wk total body fat tissue, kg |
LC |
3.64 |
0.0186 |
SW2517 |
-0.47 (0.18) |
-0.89 (0.31) |
|
93 |
19-wk 10th-rib backfat, mm |
HS |
3.36 |
0.0355 |
SW2517 |
|||
|
93 |
22-wk body weight, kg |
CB |
3.57 |
0.0424 |
SW2517 |
|||
|
18 |
4 |
16-wk 10th-rib backfat, mm† |
LC |
3.54 |
0.0222 |
SW2540 - SW1023 |
0.55 (0.14) |
0.23 (0.20) |
|
|
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|
1Chr = chromosome 2Position in Haldane cM 3LC = QTL declared as line-cross type; HS = half-sib type; CB = combined type. 4Negative logarithm of the comparison-wise p value of the test statistic against the null hypothesis of no QTL at the most likely position for the inferred QTL model. 5FDR = false discovery rate 6Estimates of additive effects with standard errors for LC QTL. The effects are expressed as (DD-PP)/2, where D = Duroc allele and P = Pietrain allele. 7Estimates of dominance effects with standard errors for LC QTL. The effects are expressed as DP-PD, where D = Duroc allele and P = Pietrain allele. †New QTL detected with the line-cross model in the second scan. |
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|
Choi et al. BMC Genetics 2010 11:97 doi:10.1186/1471-2156-11-97 |
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