Table 6

Highly significant haplotype windows

Chromosome

First SNP in window

Kb map location

p-value

PC corrected p-value


9

rs7850685

99803.7

2.14E-07

8.215372E-07

9

rs13049

99862.9

1.95E-06

1.898616E-06

22

rs178260

19654.3

7.51E-06

6.082905E-06

1

rs10158916

79946.2

8.43E-06

5.806333E-05

22

rs178259

19654.2

1.20E-05

1.794159E-05

15

rs17264145

88904.7

1.35E-05

5.959549E-05

5

rs13155209

10841.9

1.43E-05

2.769336E-05

1

rs12144807

79945.4

1.44E-05

6.107985E-05

9

rs10967991

27564.8

1.49E-05

1.232903E-04

9

rs872251

99797.2

1.60E-05

5.476211E-05

9

rs551120

134879

1.72E-05

3.428334E-05

22

rs9613019

24504.4

1.84E-05

4.384690E-06

15

rs12911150

86469.7

2.05E-05

5.855712E-05

16

rs17618203

65704.5

2.55E-05

9.370586E-06

5

rs12186813

10855.7

2.67E-05

4.666928E-05

19

rs11882629

11319.7

2.97E-05

8.237138E-05

1

rs11591084

80077.3

3.23E-05

3.804365E-05

9

rs4740559

14120.2

3.29E-05

2.475267E-05

1

rs722589

79946.9

3.49E-05

2.592247E-04

2

rs340764

16321.5

3.67E-05

5.459454E-05

9

rs3132315

136567

3.68E-05

1.894568E-05

9

rs10967992

27572

3.76E-05

4.216994E-04

1

rs17422551

79964.9

3.78E-05

2.412767E-04

7

rs16868596

88502.2

3.80E-05

5.435478E-05

12

rs1993498

10689.9

3.86E-05

5.445096E-05


Top 25 results by significance for haplotype omnibus tests.

Wason and Dudbridge BMC Genetics 2010 11:80   doi:10.1186/1471-2156-11-80

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