Table 4 |
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|
MBL2 sequence diversity parameters of several populations. |
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|
Afro-Gabonese |
Afro-Am.2 |
European |
Euro-Am.2 |
N. Chin.3 |
Hispanics2 |
Pac. Rim2 |
Kaingang4 |
Guarani4 |
||
|
|
||||||||||
|
N |
856 |
48 |
470 |
62 |
348 |
46 |
48 |
126 |
158 |
|
|
Promoter, exon 1 and part of intron 1 |
S |
22 |
13 |
16 |
9 |
9 |
13 |
9 |
11 |
7 |
|
π |
44.1 |
43.7 |
37.6 |
37.6 |
27.8 |
40.4 |
25.2 |
17.4 |
16.9 |
|
|
θW |
37.0 |
36.1 |
29.3 |
23.6 |
17,3 |
36.5 |
25.0 |
27.4 |
15.3 |
|
|
DT |
0.459 |
0.63 |
0.672 |
1.591 |
1.297 |
0.325 |
0.024 |
-0.934 |
0.23 |
|
|
DF |
-1.157 |
-0.004 |
-0.404 |
1.343 |
1.23 |
0.012 |
1.353 |
-0.498 |
1.159 |
|
|
F |
-0.583 |
0.245 |
0.028 |
1.68* |
1.51 |
0.137 |
1.085 |
-0.782 |
0.996 |
|
|
H |
-1.28 |
0.743 |
-0.276 |
-0.387 |
-1.718 |
0.039 |
-2.163# |
-3.27* |
-3.282* |
|
|
5' upstream regulatory region |
S |
16 |
10 |
13 |
7 |
8 |
10 |
8 |
9 |
6 |
|
π |
52.1 |
51.8 |
43.4 |
43.1 |
32.8 |
46.9 |
28.7 |
1.62 |
1.42 |
|
|
θW |
35.6 |
36.8 |
31.5 |
24.3 |
20.3 |
37.1 |
29.4 |
30.2 |
17.4 |
|
|
DT |
1.044 |
1.177 |
0.858 |
1.963 |
1.268 |
0.762 |
-0.063 |
-1.146 |
-0.383 |
|
|
DF |
0.129 |
0.791 |
-0.783 |
1.227 |
1.166 |
-0.406 |
1.302 |
-0.1 |
1.083 |
|
|
F |
0.606 |
1.08 |
-0.181 |
1.73* |
1.446 |
-0.03 |
1.015 |
-0.56 |
0.693 |
|
|
H |
-1.579 |
0.434 |
-0.619 |
-0.74 |
-1.921# |
-0.32 |
-2.39# |
-3.534* |
-3.33* |
|
|
Exon 1 coding region |
S |
6 |
3 |
3 |
2 |
1 |
3 |
1 |
2 |
1 |
|
π |
19.3 |
19.6 |
19.6 |
21.7 |
13.00 |
21.5 |
15.2 |
22.5 |
26.8 |
|
|
θW |
41.3 |
36.1 |
22.5 |
22.8 |
8.3 |
36.5 |
12.0 |
19.8 |
9.5 |
|
|
DT |
-0.92 |
-0.953 |
-0.183 |
-0.079 |
0.52 |
-0.866 |
0.352 |
0.202 |
1.925 |
|
|
DF |
-2.55* |
-1.7 |
0.717 |
0.726 |
0.43 |
0.9 |
0.547 |
-1.124 |
0.466 |
|
|
F |
-2.386 |
-1.718 |
0.499 |
0.564 |
0.544 |
0.432 |
0.567 |
-0.833 |
1.071 |
|
|
H |
0.30 |
0.308 |
0.343 |
0.353 |
0.203 |
0.359 |
0.227 |
0.265 |
0.048 |
|
|
|
||||||||||
|
Am. American European include the German Europeans and Euro-Brazilians, which were homogeneous at the genotypic level N. Chin. North Chinese Pac. Pacific; N number of chromosomes; S number of segregating sites; π (×10-4) nucleotide diversity per site, θW (×10-4) Watterson's Theta per site from S; DT Tajma's D; DF Fu and Li's D without an outgroup (D*); F Fu and Li's F without an outgroup (F*); H Fay and Wu's H with the chimpanzee (Genbank: AY970685.1) as an outgroup. In italics: this work; 2 [18]; 3 [28]; 4 [22]. * P < 0.05 # P < 0.10 |
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|
Boldt et al. BMC Genetics 2010 11:38 doi:10.1186/1471-2156-11-38 |
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