Table 1

Summary of the association study (genotype- or allele-based p < 0.05)

Gene

dbSNP ID(b129)

Chromosome

Location

Region*

Alleles*

χ2p-value


Genotype

Allele


SELE

rs4786

1

167958756

3'UTR

G>A

0.0462

0.1299

IL10

rs1554286

1

205010856

intron

T>C

0.0470

0.0170

CAP1

rs16837478

1

40207033

3'UTR

C>A

0.0489

0.5850

VAMP3

rs707457

1

7753651

nearGene-5

G>T

0.0755

0.0299

VAMP3

novel

1

7775035

3'UTR

A>G

0.0567

0.0220

SLC11A1

novel

2

219084963

exon

G>A

0.0113

0.0229

RHOQ

rs17038378

2

46661749

nearGene-3

W>D

0.0426

0.1773

FGA

rs2070022

4

155724398

3'UTR

C>T

0.0099

0.0083

FGA

rs6050

4

155727040

exon

A>G

0.0261

0.0077

FGA

rs2070011

4

155731347

nearGene-3

A>G

0.0208

0.0053

IL4

rs2243250

5

132037053

nearGene-5

T>C

0.0090

0.0025

SOD2

rs5746136

6

160023074

intron

G>A

0.0948

0.0348

CD36

rs3211908

7

80131852

intron

C>T

0.0402

0.1445

LPL

rs343

8

19855067

intron

C>A

0.0215

0.0075

RAPGER1

rs875968

9

133461085

intron

G>A

0.0423

0.1247

IL18

rs1946518

11

111540668

nearGene-5

T>G

0.0097

0.1591

CAT

rs17886119

11

34417280

intron

C>T

0.0138

0.2849

CAT

rs1408034

11

34432364

intron

C>T

0.0123

0.2745

TCF1

rs1169288

12

119901033

exon

T>G

0.0391

0.6975

TCF1

rs2464196

12

119919810

exon

T>C

0.0181

0.9747

SNAP23

rs9302112

15

40607743

intron

T>C

0.0414

0.0842

ACE

rs4362

17

58927493

exon

C>T

0.0384

0.0270

NOS2A

rs2297518

17

23120724

exon

G>A

0.0109

0.5354

STXBP4

rs9902718

17

50416621

intron

T>C

0.0478

0.0156

STXBP4

rs10468513

17

50417902

intron

C>A

0.0478

0.0156

STXBP4

rs11658717

17

50431985

intron

A>G

0.0396

0.0128

ASPSCR1

novel

17

77562902

intron

G>T

0.0456

0.0511


* Alleles and region for which the effect is estimated refer to the positive strand based on NCBI build 36

Ban et al. BMC Genetics 2010 11:26   doi:10.1186/1471-2156-11-26

Open Data