Additional file 7.
Putative transcription factor binding sites (TFBS) of the human NCF1 gene and its pseudogenes. A 20 kb sequence of 5'-flanking region of each of NCF1 and its pseudogenes (immediately upstream to exon 1) was retrieved from UCSC Genome Browser. Sequence alignment was performed with EMBL-EBI CLUSTAL 2.0.12 (Larkin et al., 2007). Putative TFBS was predicted with rVISTA (Loots et al., 2002) using the vertebrates TRANSFAC matrices and cut-off 1.0 for both matrix similarity and core similarity.
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Brunson et al. BMC Genetics 2010 11:13 doi:10.1186/1471-2156-11-13