Table 2

Observed and expected heterozygosities of the rSNPs in crossbred animals and Angus, Charolais and Limousin breeds

SNP

SNP position

relative to TSS

Alternate alleles

(1/2)

Crossbred animals

(n = 141)

ANG

(n = 15)

CHAR

(n = 15)

LIM

(n = 15)


HO

HE

HO

HE

HO

HE

HO

HE

SNP1

-24

C/T

0.39

0.37

0.2

0.18

0.333

0.358

0.47

0.42

SNP2

-307

C/T

0.489

0.492

0.533

0.48

0.333

0.491

0.6

0.5

SNP3

-672

A/G

0.355

0.351

0.2

0.18

0.333

0.358

0.4

0.444

SNP4

-687

C/G

0.213

0.243

0.2

0.18

0.2

0.278

0.07

0.064

SNP5

-733

C/T

0.397

0.366

0.2

0.18

0.333

0.358

0.47

0.42

SNP6

-944

C/T

0.163

0.15

0

0

0.133

0.124

0

0

SNP7

-961

A/C

0.028

0.028

0

0

0.333

0.278

0.53

0.391


ANG: Aberdeen Angus, CHAR: Charolais, LIM: Limousin HO: Observed heterozygosity, HE: Expected heterozygosity

Aslan et al. BMC Genetics 2010 11:111   doi:10.1186/1471-2156-11-111

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