Table 1

Positions and minor allele frequencies of the rSNPs observed in crossbred cattle (n = 141) and Angus (n = 15), Charolais (n = 15) and Limousin (n = 15) breeds

SNP

SNP position relative to TSS

dbSNP submitter snp (ss) no

Alternate alleles (1/2)

Minor Allele Frequency


Crossbred animals

ANG

CHAR

LIM

SNP1

-24

275515731

C/T

0.245 (T)

0.100 (T)

0.233 (T)

0.300 (T)

SNP2

-307

275515732

C/T

0.436 (C)

0.400 (T)

0.433 (C)

0.500 (T)

SNP3

-672

275515733

A/G

0.227 (A)

0.100 (A)

0.233 (A)

0.333 (A)

SNP4

-687

275515734

C/G

0.142 (G)

0.100 (G)

0.167 (G)

0.033 (G)

SNP5

-733

275515735

C/T

0.241 (T)

0.100 (T)

0.233 (T)

0.300 (T)

SNP6

-944

275515736

C/T

0.082 (T)

0.0 (T)

0.067 (T)

0.0 (T)

SNP7

-961

275515737

A/C

0.014 (C)

0.0 (A)

0.167 (A)

0.267 (A)


ANG: Aberdeen Angus, CHAR: Charolais, LIM: Limousin

Aslan et al. BMC Genetics 2010 11:111   doi:10.1186/1471-2156-11-111

Open Data