Table 5

Indexes of population structure

Standardized variance

No. of samples

FST


Among populations:

Global analysis

55

0.114****

European

23

0.013****

European-1

14

0.003*

European-2

9

0.006*

Intermediate

9

0.009*

African

10

0.019***

Asian

13

0.026****


FCT


Among groups:

European-Intermediate-Asian-African

0.143****

European-Intermediate

0.099****

European-African

0.179****

European-Asian

0.199****

Intermediate-African

0.042****

Intermediate-Asian

0.028****

African-Asian

0.059****

European-1-European-2

0.018****

European-2-Intermediate-1-Intermediate-2

0.058****

European-2-Intermediate-1

0.065**

European-2-Intermediate-2

0.040*

European-2-Asian-1

0.143***

Intermediate-1-Intermediate-2

0.027*

Intermediate-1-African-1

0.040**

Intermediate-1-Asian-1-Asian-2

0.036****

Intermediate-1-Asian-1

0.025**

Intermediate-1-Asian-2

0.041**

African-1-African-2

0.031*

Asian-1-Asian-2

0.045**


* P < 0.05

** P < 0.001

*** P < 0.0001

**** P < 0.00001

Flegontova et al. BMC Genetics 2009 10:62   doi:10.1186/1471-2156-10-62

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