Table 1

Mean, standard deviation (SD), and range for MAF and FST by SNP function

SNP function

Number of SNPs

Puerto Rican

non-Hispanic white


Mean (SD) MAF

Mean (SD) FST

Range FST

Mean (SD) MAF

Mean (SD) FST

Range FST


3'UTR

5

0.20 (0.10)

0.022 (0.050)

0.112

0.19 (0.14)

0.050 (0.067)

0.141


Intron

37

0.31 (0.13)

0.019 (0.029)

0.131

0.29 (0.13)

0.019 (0.032)

0.134


Non-Synonymous

27

0.15 (0.10)1

0.041 (0.061)

0.255

0.16 (0.12)2

0.033 (0.053)

0.166


Promoter

22

0.30 (0.15)

0.022 (0.061)

0.290

0.27 (0.15)

0.033 (0.058)

0.250


Synonymous

8

0.28 (0.14)

0.036 (0.061)

0.177

0.32 (0.18)

0.013 (0.029)

0.085


1 Significantly different from Puerto Rican intron (p < 0.001), promoter (p = 0.001), synonymous SNPs (p = 0.015)

2 Significantly different from NHW intron (p < 0.001), promoter (p = 0.014), synonymous SNPs (p = 0.027)

Mattei et al. BMC Genetics 2009 10:45   doi:10.1186/1471-2156-10-45

Open Data