Table 4

Primary DNA vs Whole Genome Amplified DNA Analyzed on Illumina 610 Microarrays

Sample1 Primary Isolate

Sample2 Whole Genome Amplified

No Call in one of the samples

No Call in Both Samples

Concordance

Discordance

Concordance Rate (%)


MOD 881

WGA 881

31221

981

559134

1156

99.79

MOD 892

WGA 892

18592

1098

572300

502

99.91

MOD 919

WGA 919

27450

990

563096

956

99.83

MOD 937

WGA 937

16551

1075

574418

448

99.92

MOD 920

WGA 920

27354

1425

562951

762

99.86

MOD 975

WGA 975

26404

1758

563599

731

99.87

MOD 986

WGA 986

22113

1410

568375

594

99.9

MOD 001

WGA 001

33998

1850

555479

1165

99.79


Concordance between sample pairs was determined by Illumina BeadArray analysis.

Hardin et al. BMC Genetics 2009 10:38   doi:10.1186/1471-2156-10-38

Open Data