Table 3

Illumina 610 Microarray Data: QC Analysis On DNA Obtained from Two 3 mm Guthrie Card Punches

Specimen Name

No Calls

Calls

Total

Call Rate (%)


Primary DNA Isolate

MOD 881

1484

591008

592492

99.75

MOD 892

1581

590911

592492

99.73

MOD 919

1502

590990

592492

99.75

MOD 937

1607

590885

592492

99.73

MOD 920

2524

589968

592492

99.57

MOD 975

2840

589652

592492

99.52

MOD 986

2432

590060

592492

99.59

MOD 001

3240

589252

592492

99.45

Corresponding Whole Genome Amplified DNA

WGA 881

31699

560793

592492

94.65

WGA 892

19207

573285

592492

96.76

WGA 919

27928

564564

592492

95.29

WGA 937

17094

575398

592492

97.11

WGA 920

27680

564812

592492

95.33

WGA 975

27080

565412

592492

95.43

WGA 986

22501

569991

592492

96.20

WGA 001

34458

558034

592492

94.18


SNP call rates were determined by Illlumina BeadArray analysis.

Hardin et al. BMC Genetics 2009 10:38   doi:10.1186/1471-2156-10-38

Open Data