Table 1

GlnA protein sequence distribution and similarity in the Actinobacteria

Sequence accesion number, length (amino acids) and percentage similarity

Organism

glnA1

glnA2

glnA3

glnA4


Acidothermus cellulolyticus 11B

YP_872682

(474 aa) 72%

YP_872678

(453 aa) 68%

YP_872678

(453 aa) 30%

YP_873609

(446 aa) 61%

Arthrobacter sp. FB24

YP_947504

(474 aa) 63%

YP_947491

(446 aa) 65%

YP_831086

(446 aa) 29%

YP_831086

(446 aa) 31%

Bifidobacterium longum NCC2705

NP_696248

(478 aa) 62%

NP_696466

(445 aa) 60%

NP_696466

(445 aa) 27%

NP_696466

(445 aa) 29%

Brevibacterium linens BL2

ZP_00378605

(474 aa) 62%

ZP_00378066

(452 aa) 62%

ZP_00378066

(452 aa) 29%

ZP_00381218

(454 aa) 56%

Corynebacterium diphtheriae NCTC 13129

NP_939986

(478 aa) 67%

NP_940011

(446 aa) 64%

NP_940011

(446 aa) 25%

NP_940011

(466 aa) 28%

C. efficiens YS-314

NP_738714

(477 aa) 70%

NP_738737

(516 aa) 66%

NP_738737

(516 aa) 29%

NP_738737

(516 aa) 29%

C. glutamicum ATCC 13032

YP_226455

(477 aa) 70%

YP_226471

(446 aa) 65%

YP_226471

(446 aa) 29%

YP_226471

(446 aa) 29%

C. jeikeium K411

YP_250482

(500 aa) 71%

YP_250455

(448 aa) 71%

YP_250455

(448 aa) 29%

YP_250455

(448 aa) 29%

Frankia sp. EAN1pec

YP_001506114

(474 aa) 66%

YP_001506110

(452 aa) 65%

YP_001510745

(496 aa) 38%

YP_001505022

(470 aa) 56%

Janibacter sp. HTCC2649

ZP_00994949

(474 aa) 66%

ZP_00995601 (445 aa) 70%

ZP_00995688 (446 aa) 42%

ZP_00997071

(461 aa) 59%

Kineococcus radiotolerans SRS30216

YP_001363019

(474 aa) 68%

YP_001363024

(447 aa) 65%

YP_001363024

(447 aa) 31%

YP_001361387

(460 aa) 61%

Leifsonia xyli subsp. xyli str. CTCB07

YP_062980

(474 aa) 62%

YP_061977

(445 aa) 63%

YP_061977

(445 aa) 28%

YP_061977

(445 aa) 32%

Mycobacterium avium 104

YP_881471

(478 aa) 90%

YP_881448

(446 aa) 94%

YP_882016

(450 aa) 80%

YP_882894

(468 aa) 78%

M. bovis AF2122/97

NP_855893

(478 aa) 100%

NP_855895

(446 aa) 100%

NP_855562

(450 aa) 100%

NP_856530

(457 aa) 100%

M. bovis BCG str. Pasteur 1173P2

YP_978326

(478 aa) 100%

YP_978328

(446 aa) 100%

YP_978005

(450 aa) 100%

YP_978966

(475 aa) 100%

M. leprae TN

NP_301707

(478 aa) 91%

NP_302123

(448 aa) 93%

NP_302123

(448 aa) 27%

NP_302123

(448 aa) 29%

M. smegmatis str. MC2 155

YP_888567

(478 aa) 84%

YP_888571

(446 aa) 88%

YP_887864

(453 aa) 64%

YP_886932

(457 aa) 74%

M. sp. KMS

YP_939366

(478 aa) 85%

YP_939374

(446 aa) 89%

YP_936250

(437 aa) 47%

YP_938091

(455 aa) 74%

M. tuberculosis CDC1551

NP_336749

(478 aa) 00%

NP_336751

(446 aa) 100%

NP_336385

(450 aa) 100%

NP_337439

(457 aa) 100%

M. tuberculosis F11

ZP_01685137

(478 aa) 100%

ZP_01685139

(446 aa) 100%

ZP_01684789

(450 aa) 100%

ZP_01685769

(462 aa) 100%

M. tuberculosis H37Rv

NP_216736

(478 aa) 100%

NP_216738

(446 aa) 100%

NP_216394

(450 aa) 100%

NP_217376

(457 aa) 100%

M. ulcerans Agy99

YP_905364

(478 aa) 90%

YP_905360

(446 aa) 93%

YP_905360

(446 aa) 27%

YP_905360

(446 aa) 30%

M. gilvum PYR-GCK

YP_001134193

(478 aa) 84%

YP_001134174

(446 aa) 89%

YP_001134583

(453 aa) 66%

YP_001135323

(469 aa) 74%

M. vanbaalenii PYR-1

YP_954385

(478 aa) 85%

YP_954396

(446 aa) 88%

YP_953732

(442 aa) 64%

YP_953098

(459 aa) 72%

Nocardia farcinica IFM 10152

YP_117877

(478 aa) 77%

YP_117870

(446 aa) 83%

YP_117870

(446 aa) 28%

YP_117870

(446 aa) 31%

Nocardioides sp. JS614

YP_923487

(474 aa) 71%

YP_923242

(455 aa) 66%

YP_923242

(455 aa) 28%

YP_923778

(464 aa) 59%

Propionibacterium acnes KPA171202

YP_055385

(473 aa) 66%

YP_055378

(468 aa) 63%

YP_055378

(468 aa) 30%

YP_055378

(468 aa) 30%

Rhodococcus sp. RHA1

YP_701142

(478 aa) 81%

YP_701152

(446 aa) 84%

YP_701692

(433 aa) 47%

YP_705251

(451 aa) 33%

Salinispora tropica CNB-440

YP_001160144

(474 aa) 70%

YP_001160151

(451 aa) 68%

YP_001160151

(451 aa) 29%

YP_001160151

(451 aa) 30%

Streptomyces avermitilis MA-4680

NP_827182

(469 aa) 70%

NP_827131

(453 aa) 69%

NP_827131

(453 aa) 29%

NP_827901

(454 aa) 65%

S. coelicolor A3(2)

NP_626450

(469 aa) 71%

NP_626490

(453 aa) 69%

NP_626490

(453 aa) 28%

NP_625889

(462 aa) 64%

Symbiobacterium thermophilum IAM 14863

YP_074027

(471 aa) 50%

YP_074027

(471 aa) 33%

YP_074027

(471 aa) 28%

YP_074027

(471 aa) 32%

Thermobifida fusca YX

YP_289049

(474 aa) 68%

YP_289043

(453 aa) 68%

YP_289043

(453 aa) 27%

YP_289043

(453 aa) 28%

Marine actinobacterium PHSC20C1

ZP_01131573

(478 aa) 64%

ZP_01129622

(445 aa) 62%

ZP_01129567

(416 aa) 27%

ZP_01129199

(455 aa) 70%


GlnA protein sequences distribution in the Actinobacteria. The percentage similarity to the M. tuberculosis GS sequences is indicated by means of amino acid identity. The accession number and amino acid length of the protein sequence is indicated for each sequence.

Hayward et al. BMC Evolutionary Biology 2009 9:48   doi:10.1186/1471-2148-9-48

Open Data