Additional file 1.

Tree of eukaryotes with the Eukaryotic Dataset and ML inference. The analyses using RAxML (WAG+Gamma; four categories) support the grouping of Malawimonadozoa and JEH with a BS of 77%. Other differences with the tree using BI method (Figure 1) include Plantae relationships, and the placement of Haptophyceae, which receive no support for both BI and ML analyses with this dataset. For more details see legend of Figure 1.

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Liu et al. BMC Evolutionary Biology 2009 9:272   doi:10.1186/1471-2148-9-272