Table 1

Plant materials used and all sequences obtained in this study

Taxa

Codea

Genome

Acccession

No.b

Origin

GenBank Accession No.


Os125

SDBE


O. officinalis

off_THA

CC

100179

Thailand

FJ918688

FJ918761

O. officinalis

off_VIE

CC

101399

Vietnam

FJ918689

FJ918762

O. officinaliscd

off_BAN

CC

102460

Bangladesh

FJ918690

FJ918763

O. officinalis

off_CHI

CC

104618

China

FJ918691

FJ918764

O. officinalis

off_MAL

CC

104672

Malaysia

FJ918692

FJ918765

O. officinalis

off_IND

CC

104708

India

FJ918693

FJ918766

O. officinalis

off_MYA

CC

106390

Myanmar

FJ918694, 695e

FJ918767, 768e

O. officinalis

off_PNG

CC

106519

Papua New Guinea

FJ918696

FJ918769

O. eichingeri

eic_UGA1

CC

105159

Uganda

FJ918702

FJ918770

O. eichingeric

eic_UGA2

CC

105162

Uganda

FJ918701, 703e

FJ918771

O. eichingeri

eic_LAK1

CC

105407

Sri Lanka

FJ918700, 704e

FJ918772, 773e

O. eichingeric

eic_LAK2

CC

104608

Sri Lanka

FJ918705

FJ918774

O. eichingerid

eic_LAK3

CC

105415

Sri Lanka

FJ918706

FJ918775

O. rhizomatis

rhi_LAK1

CC

105440

Sri Lanka

FJ918697, 698e

FJ918776

O. rhizomatisc

rhi _LAK2

CC

103414

Sri Lanka

FJ918699

FJ91877, 878e

O. punctatac

pun _KEN

BBCC

104975

Kenya

FJ918707, 724e

FJ918780, 795e

O. punctata

pun _UGA

BBCC

105160

Uganda

FJ918708, 722e

FJ918781, 794e

O. punctatad

pun _IND

BBCC

100125

India

FJ918709, 723e

FJ918779, 796e

O. malampuzhaensis

mal _IND1

BBCC

80765

India

FJ918710, 729e

FJ918786, 799e

O. malampuzhaensis

mal _IND2

BBCC

80767

India

FJ918711, 728e

FJ918785, 800e

O. malampuzhaensiscd

mal _IND3

BBCC

80768

India

FJ918712, 727e

FJ918784, 801e

O. minutac

min _PHI1

BBCC

101141

Philippine

FJ918713, 725e

FJ918782, 798e

O. minuta

min _PHI2

BBCC

104674

Philippine

FJ918714, 726e

FJ918783, 797e

O. altacd

alt _SUR

CCDD

100967

Suriname

FJ918715, 731, 739e

FJ918787, 802e

O. alta

alt _BRA

CCDD

100161

Brazil

FJ918755, 756, 757e

FJ918812, 817e

O. alta

alt _GUY

CCDD

105143

Guyana

FJ918752, 753, 754e

FJ918810, 816e

O. grandiglumiscd

gla _BRA1

CCDD

105669

Brazil

FJ918716, 730, 738e

FJ918788, 803, 804e

O. grandiglumis

gla _BRA2

CCDD

101405

Brazil

FJ918743, 744, 745e

FJ918815, 820e

O. grandiglumis

gla _BRA3

CCDD

105664

Brazil

FJ918758, 759, 760e

FJ918814, 821e

O. latifolia

lat _CRA

CCDD

100167

Costa Rica

FJ918717, 734, 736e

FJ918791, 805e

O. latifolia

lat _PAN

CCDD

100966

Panama

FJ918718, 732, 735e

FJ918789, 806e

O. latifoliacd

lat _NIG

CCDD

102481

Nigaragua

FJ918719, 733, 737e

FJ918790, 807e

O. latifolia

lat _GUA

CCDD

100171

Guatemala

FJ918749, 750, 751e

FJ918811, 819e

O. latifolia

lat _MEX

CCDD

100914

Mexico

FJ918746, 747, 748e

FJ918813, 818e

O. punctatac

pun _CAM

BB

105984

Cameroon

FJ918720

FJ918792

O. punctatad

pun _CHA

BB

105607

Chad

FJ918721

FJ918793

O. australiensisc

aus _AUS1

EE

105277

Australia

FJ918740

FJ918808

O. australiensis

aus _AUS2

EE

101410

Australia

FJ918741

FJ918809

O. granulatec

gra _LAK

GG

100880

Sri Lanka

FJ918742

FJ918822


a The first three letters represent species name of an accession, followed by its origin country.

b All accessions were provided by the Genetic Resources Center of the International Rice Research Institute (IRRI), Los Banos, the Philippines.

c Accession selected to represent the species for divergence time analyses.

d Accession selected for fluorescent in situ hybridization.

e Heterozygous locus with more than one allele.

Wang et al. BMC Evolutionary Biology 2009 9:250   doi:10.1186/1471-2148-9-250

Open Data