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Table 1
Plant materials used and all sequences obtained in this study
Taxa	Code^a	Genome	Acccession No.^b	Origin	GenBank Accession No.

					*Os125*	*SDBE*

O. officinalis	off_THA	CC	100179	Thailand	FJ918688	FJ918761
O. officinalis	off_VIE	CC	101399	Vietnam	FJ918689	FJ918762
O. officinalis^cd	off_BAN	CC	102460	Bangladesh	FJ918690	FJ918763
O. officinalis	off_CHI	CC	104618	China	FJ918691	FJ918764
O. officinalis	off_MAL	CC	104672	Malaysia	FJ918692	FJ918765
O. officinalis	off_IND	CC	104708	India	FJ918693	FJ918766
O. officinalis	off_MYA	CC	106390	Myanmar	FJ918694, 695^e	FJ918767, 768^e
O. officinalis	off_PNG	CC	106519	Papua New Guinea	FJ918696	FJ918769
O. eichingeri	eic_UGA1	CC	105159	Uganda	FJ918702	FJ918770
O. eichingeri^c	eic_UGA2	CC	105162	Uganda	FJ918701, 703^e	FJ918771
O. eichingeri	eic_LAK1	CC	105407	Sri Lanka	FJ918700, 704^e	FJ918772, 773^e
O. eichingeri^c	eic_LAK2	CC	104608	Sri Lanka	FJ918705	FJ918774
O. eichingeri^d	eic_LAK3	CC	105415	Sri Lanka	FJ918706	FJ918775
O. rhizomatis	rhi_LAK1	CC	105440	Sri Lanka	FJ918697, 698^e	FJ918776
O. rhizomatis^c	rhi _LAK2	CC	103414	Sri Lanka	FJ918699	FJ91877, 878^e
O. punctata^c	pun _KEN	BBCC	104975	Kenya	FJ918707, 724^e	FJ918780, 795^e
O. punctata	pun _UGA	BBCC	105160	Uganda	FJ918708, 722^e	FJ918781, 794^e
O. punctata^d	pun _IND	BBCC	100125	India	FJ918709, 723^e	FJ918779, 796^e
O. malampuzhaensis	mal _IND1	BBCC	80765	India	FJ918710, 729^e	FJ918786, 799^e
O. malampuzhaensis	mal _IND2	BBCC	80767	India	FJ918711, 728^e	FJ918785, 800^e
O. malampuzhaensis^cd	mal _IND3	BBCC	80768	India	FJ918712, 727^e	FJ918784, 801^e
O. minuta^c	min _PHI1	BBCC	101141	Philippine	FJ918713, 725^e	FJ918782, 798^e
O. minuta	min _PHI2	BBCC	104674	Philippine	FJ918714, 726^e	FJ918783, 797^e
O. alta^cd	alt _SUR	CCDD	100967	Suriname	FJ918715, 731, 739^e	FJ918787, 802^e
O. alta	alt _BRA	CCDD	100161	Brazil	FJ918755, 756, 757^e	FJ918812, 817^e
O. alta	alt _GUY	CCDD	105143	Guyana	FJ918752, 753, 754^e	FJ918810, 816^e
O. grandiglumis^cd	gla _BRA1	CCDD	105669	Brazil	FJ918716, 730, 738^e	FJ918788, 803, 804^e
O. grandiglumis	gla _BRA2	CCDD	101405	Brazil	FJ918743, 744, 745^e	FJ918815, 820^e
O. grandiglumis	gla _BRA3	CCDD	105664	Brazil	FJ918758, 759, 760^e	FJ918814, 821^e
O. latifolia	lat _CRA	CCDD	100167	Costa Rica	FJ918717, 734, 736^e	FJ918791, 805^e
O. latifolia	lat _PAN	CCDD	100966	Panama	FJ918718, 732, 735^e	FJ918789, 806^e
O. latifolia^cd	lat _NIG	CCDD	102481	Nigaragua	FJ918719, 733, 737^e	FJ918790, 807^e
O. latifolia	lat _GUA	CCDD	100171	Guatemala	FJ918749, 750, 751^e	FJ918811, 819^e
O. latifolia	lat _MEX	CCDD	100914	Mexico	FJ918746, 747, 748^e	FJ918813, 818^e
O. punctata^c	pun _CAM	BB	105984	Cameroon	FJ918720	FJ918792
O. punctata^d	pun _CHA	BB	105607	Chad	FJ918721	FJ918793
O. australiensis^c	aus _AUS1	EE	105277	Australia	FJ918740	FJ918808
O. australiensis	aus _AUS2	EE	101410	Australia	FJ918741	FJ918809
O. granulate^c	gra _LAK	GG	100880	Sri Lanka	FJ918742	FJ918822

^aThe first three letters represent species name of an accession, followed by its origin country. ^bAll accessions were provided by the Genetic Resources Center of the International Rice Research Institute (IRRI), Los Banos, the Philippines. ^cAccession selected to represent the species for divergence time analyses. ^dAccession selected for fluorescent in situ hybridization. ^eHeterozygous locus with more than one allele.
Wang et al. BMC Evolutionary Biology 2009 9:250 doi:10.1186/1471-2148-9-250

Table 1