Table 1

Information of 82 fungi genomes used in this study

Species

Strain

(Sub)Phylum

Source

Download date


Aspergillus clavatus

NRRL1

Ascomycota

BROAD-FGI

Mar. 2008


Aspergillus flavus

NRRL3357

Ascomycota

BROAD-FGI

Mar. 2008


Aspergillus fumigatus

Af293

Ascomycota

BROAD-FGI

Mar. 2008


Aspergillus nidulans

FGSCA4

Ascomycota

BROAD-FGI

Mar. 2008


Aspergillus nigera

ATCC1015

Ascomycota

BROAD-FGI

Mar. 2008


Aspergillus oryzae

RIB40

Ascomycota

BROAD-FGI

Mar. 2008


Aspergillus terreus

NIH2624

Ascomycota

BROAD-FGI

Mar. 2008


Botrytis cinerea

B05.10

Ascomycota

BROAD-FGI

Mar. 2008


Candida albicans

WO-1

Ascomycota

BROAD-FGI

Mar. 2008


Candida albicans

SC5314

Ascomycota

BROAD-FGI

Mar. 2008


Candida glabrata

CBS138

Ascomycota

NCBI

Mar. 2008


Candida guilliermondii

ATCC6260

Ascomycota

BROAD-FGI

Mar. 2008


Candida lusitaniae

ATCC42720

Ascomycota

BROAD-FGI

Mar. 2008


Candida parapsilosis

isolate 317

Ascomycota

BROAD-FGI

Mar. 2008


Candida tropicalis

MYA-3404

Ascomycota

BROAD-FGI

Mar. 2008


Chaetomium globosum

CBS148.51

Ascomycota

BROAD-FGI

Mar. 2008


Coccidioides immitis

RS

Ascomycota

BROAD-FGI

Aug. 2008


Coccidioides immitis

h538.4

Ascomycota

BROAD-FGI

Aug. 2008


Coccidioides immitis

RMSCC2394

Ascomycota

BROAD-FGI

Aug. 2008


Coccidioides immitis

RMSCC3703

Ascomycota

BROAD-FGI

Aug. 2008


Coccidioides posadasii

Silveira

Ascomycota

BROAD-FGI

Aug. 2008


Coccidioides posadasii

RMSCC3488

Ascomycota

BROAD-FGI

Aug. 2008


Cochliobolus heterostrophus

C5

Ascomycota

JGI

Aug. 2008


Paracoccidioides brasiliensis

Pb01

Ascomycota

BROAD-FGI

Aug. 2008


Paracoccidioides brasiliensis

Pb03

Ascomycota

BROAD-FGI

Aug. 2008


Paracoccidioides brasiliensis

Pb18

Ascomycota

BROAD-FGI

Aug. 2008


Debaryomyces hansenii

CBS767

Ascomycota

BROAD-FGI

Mar. 2008


Eremothecium gossypiib

ATCC10895

Ascomycota

NCBI

Mar. 2008


Fusarium graminearum

PH-1

Ascomycota

BROAD-FGI

Mar. 2008


Fusarium oxysporum

f. sp. lycopersici

Ascomycota

BROAD-FGI

Mar. 2008


Fusarium verticillioides

7600

Ascomycota

BROAD-FGI

Mar. 2008


Histoplasma capsulatumc

WU24(NAm1)

Ascomycota

BROAD-FGI

Mar. 2008


Kluyveromyces lactis

NRRLY-1140

Ascomycota

BROAD-FGI

Mar. 2008


Kluyveromyces waltii

NCYC 2644

Ascomycota

RFCG

Mar. 2008


Lodderomyces elongisporus

NRRLYB-4239

Ascomycota

BROAD-FGI

Mar. 2008


Magnaporthe grisea

70–15

Ascomycota

BROAD-FGI

Mar. 2008


Mycosphaerella fijiensis

CIRAD86

Ascomycota

JGI

Mar. 2008


Mycosphaerella graminicola

IPO323

Ascomycota

JGI

Mar. 2008


Nectria haematococcad

MPVI

Ascomycota

JGI

Mar. 2008


Neosartorya fischeri

NRRL181

Ascomycota

BROAD-FGI

Mar. 2008


Neurospora crassa

OR74A

Ascomycota

BROAD-FG

Mar. 2008I


Pyrenophora tritici-repentis

Pt-1C-BFP

Ascomycota

BROAD-FGI

Aug. 2008


Pichia stipitis

CBS6054

Ascomycota

JGI

Mar. 2008


Podospora anserina

DSM980

Ascomycota

RFCG

Mar. 2008


Saccharomyces cerevisiae

S288C

Ascomycota

NCBI

Mar. 2008


Saccharomyces cerevisiae

rm11-1a

Ascomycota

BROAD-FGI

Mar. 2008


Saccharomyces cerevisiae

YJM789

Ascomycota

RFCG

Mar. 2008


Saccharomyces paradoxus

NRRLY-17217

Ascomycota

RFCG

Mar. 2008


Saccharomyces mikatae

IFO1815

Ascomycota

RFCG

Mar. 2008


Saccharomyces kudriavzevii

IFO1802

Ascomycota

RFCG

Mar. 2008


Saccharomyces bayanus

MCYC623

Ascomycota

RFCG

Mar. 2008


Saccharomyces castellii

NRRLY-12630

Ascomycota

RFCG

Mar. 2008


Saccharomyces kluyveri

NRRL Y-12651

Ascomycota

RFCG

Mar. 2008


Schizosaccharomyces japonicus

yFS275

Ascomycota

BROAD-FGI

Mar. 2008


Schizosaccharomyces octosporus

yFS286

Ascomycota

FGR

Aug. 2008


Schizosaccharomyces pombe

972h-

Ascomycota

BROAD-FGI

Mar. 2008


Sclerotinia sclerotiorum

1980

Ascomycota

BROAD-FGI

Mar. 2008


Stagonospora nodorum

SN15

Ascomycota

BROAD-FGI

Mar. 2008


Trichoderma atroviride

IMI202040

Ascomycota

JGI

Aug. 2008


Trichoderma reesei

QM6a

Ascomycota

JGI

Mar. 2008


Trichoderma virens

Gv29-8

Ascomycota

JGI

Mar. 2008


Uncinocarpus reesii

1704

Ascomycota

BROAD-FGI

Mar. 2008


Verticillium dahliae

VdLs.17

Ascomycota

BROAD-FGI

Aug. 2008


Verticillium albo-atrum

VaMs.102

Ascomycota

BROAD-FGI

Aug. 2008


Yarrowia lipolytica

CLIB122

Ascomycota

NCBI

Mar. 2008



Coprinus cinereus

Okayama7#130

Basidiomycota

BROAD-FGI

Mar. 2008


Cryptococcus neoformans

serotypeA, strainH99

Basidiomycota

BROAD-FGI

Mar. 2008


Cryptococcus neoformans

serotypeD, strainJEC21

Basidiomycota

NCBI

Mar. 2008


Cryptococcus gattii

serotypeB, strainWM276

Basidiomycota

RFCG

Mar. 2008


Cryptococcus gattii

serotypeB/C, strainR265

Basidiomycota

RFCG

Mar. 2008


Laccaria bicolor

S238N-H82

Basidiomycota

JGI

Mar. 2008


Malassezia globosa

CBS7966

Basidiomycota

FGR

Aug. 2008


Phanerochaete chrysosporium

RP-78

Basidiomycota

JGI

Mar. 2008


Postia placenta

Basidiomycota

JGI

Mar. 2008


Puccinia graminis

f. sp. tritici

Basidiomycota

BROAD-FGI

Mar. 2008


Sporobolomyces roseus

Basidiomycota

JGI

Mar. 2008


Ustilago maydis

521

Basidiomycota

BROAD-FGI

Mar. 2008


Batrachochytrium dendrobatidis

JAM81

Chytridiomycota

JGI

Apr. 2008


Batrachochytrium dendrobatidis

JEL423

Chytridiomycota

BROAD-FGI

Mar. 2008



Rhizopus oryzae

RA99–880

Mucoromycotina

BROAD-FGI

Mar. 2008


Phycomyces blakesleeanus

Mucoromycotina

JGI

Mar. 2008



Encephalitozoon cuniculi

GB-M1

Microsporidia

NCBI

Mar. 2008


a annotated in house ([See Additional file 3])

d synonym: Ashbya gossypii

c teleomorph: Ajellomyces capsulata

d anamorph: Fusarium solani

Wang et al. BMC Evolutionary Biology 2009 9:195   doi:10.1186/1471-2148-9-195

Open Data