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Open Access Highly Accessed Research article

A fungal phylogeny based on 82 complete genomes using the composition vector method

Hao Wang1, Zhao Xu1, Lei Gao2 and Bailin Hao134*

Author Affiliations

1 T-life Research Center, Department of Physics, Fudan University, Shanghai 200433, PR China

2 Department of Botany & Plant Sciences, University of California, Riverside, CA(92521), USA

3 Institute of Theoretical Physics, Academia Sinica, Beijing 100190, PR China

4 Santa Fe Institute, Santa Fe, NM(87501), USA

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BMC Evolutionary Biology 2009, 9:195  doi:10.1186/1471-2148-9-195

Published: 10 August 2009

Additional files

Additional file 1:

Previous phylogeny of Aspergilli and Hypocreales species. This file contains two diagrams showing (1) the relationships among 8 aspergilli according to [36] and (2) NCBI classification of the 7 Hypocreales species [18].

Format: PDF Size: 77KB Download file

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Open Data

Additional file 2:

The Selection of peptide length K. This file contains to parts: (1) runtime of the CVTree program with different K values; (2) tree with K values varied from 3 to 10. The results suggest that the tree with K = 7 is the best one.

Format: PDF Size: 272KB Download file

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Open Data

Additional file 3:

Statistical testing of the CVTree. This file contains two parts: (1) the bootstrap of CVTree; (2) The robustness of the CVTree to different versions of genome annotation.

Format: PDF Size: 123KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data