Research article
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4
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* Corresponding author: Zaida Luthey-Schulten zan@uiuc.edu
- † Equal contributors
1 Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
2 Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
3 Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
BMC Evolutionary Biology 2009, 9:179 doi:10.1186/1471-2148-9-179
Published: 29 July 2009Additional files
Additional File 1:
Genomes used in the study. The table contains the list of genomes used along with the occurrence of zinc-binding ribosomal proteins sequences in each.
Format: PDF Size: 87KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 2:
S4 sequence alignment. The sequence alignment contains the full alignment of all S4 sequences used in the study.
Format: FAST Size: 316KB Download file
Additional File 3:
Zur binding site search profiles for Actinobacteria. The Zur binding site searching profile for Actinobacteria contains reference profile we used as seeds and fed into the software MEME/MAST to search for the Zur DNA-binding motifs in other paralogous Actinobacteria S4 genes.
Format: FAST Size: 1KB Download file
Additional File 4:
Zur binding site search profiles for Gammaproteobacteria. The Zur binding site searching profile for Gammaproteobacteria contains reference profile used as seeds for the software MEME/MAST to search for the Zur DNA-binding motifs in other paralogous Proteobacteria S4 genes.
Format: FAST Size: 1KB Download file
Additional File 5:
Zur binding site search profiles for Bacillus. The Zur binding site searching profile for Bacillus contains reference profile used as seeds for the software MEME/MAST to search for the Zur DNA-binding motifs in paralogous Clostridia S4 genes.
Format: FAST Size: 1KB Download file