Table 1 |
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|
Ribosomal protein-sequences and species included |
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|
Ribosomal protein |
Length in alignment |
# of variable sites |
Occurrence* |
Clade |
Species |
Common name |
Occurrence*** |
|
|
|||||||
|
RpL32 |
134 |
110 |
31 |
Nematoda |
Caenorhabditis elegans |
Roundworm |
47 |
|
RpL11 |
133 |
71 |
29 |
Tardigrada |
Hypsibius dujardini |
Water bear |
38 |
|
|
|||||||
|
RpL13A |
146 |
108 |
29 |
Collembola |
Folsomia candida |
Springtail |
48 |
|
RpS8 |
34 |
15 |
29 |
Orchesella cincta |
Springtail |
7 |
|
|
|
|||||||
|
RpS5 |
150 |
68 |
28 |
Insecta |
Apis mellifera |
Honeybee |
48 |
|
RpS6 |
98 |
58 |
28 |
Drosophila melanogaster |
Fruit fly |
48 |
|
|
RpS7 |
168 |
128 |
28 |
Locusta migratoria |
Migratory locust |
47 |
|
|
RpL21 |
164 |
120 |
27 |
Acyrthosiphon pisum |
Pea aphid |
45 |
|
|
RpL24 |
52 |
40 |
27 |
Tribolium castaneum |
Red flour beetle |
44 |
|
|
RpS15 |
141 |
85 |
27 |
Plutella xylostella |
Diamondback moth |
44 |
|
|
RpS18 |
116 |
56 |
27 |
Toxoptera citricida |
Brown citrus aphid |
40 |
|
|
RpS23 |
140 |
64 |
27 |
Manduca sexta |
Tobacco hornworm |
38 |
|
|
RpL12 |
150 |
81 |
25 |
Culicoides sonorensis |
Mosquito |
36 |
|
|
RpL13 |
39 |
32 |
25 |
Glossina morsitans |
Tsetse fly |
35 |
|
|
RpL31 |
108 |
87 |
25 |
Ctenocephalides felis |
Cat flea |
34 |
|
|
RpS11 |
151 |
104 |
25 |
Homalodisca coagulata |
Glassy-winged sharpshooter |
32 |
|
|
RpS12 |
106 |
83 |
25 |
||||
|
RpS16 |
137 |
73 |
25 |
Pediculus humanus |
Human head/body louse |
22 |
|
|
RpS9 |
130 |
49 |
25 |
||||
|
RpL15 |
169 |
117 |
24 |
Diaprepes abbreviatus |
Root weevil |
21 |
|
|
RpS14 |
152 |
58 |
24 |
Tricholepisma aurea |
Silverfish |
18 |
|
|
RpS19 |
130 |
107 |
24 |
Ips pini |
Pine engraver |
16 |
|
|
RpL34 |
93 |
73 |
23 |
Anopheles funestus |
African malaria mosquito |
11 |
|
|
RpL37A |
87 |
43 |
23 |
|
|||
|
RpLp0 |
36 |
32 |
23 |
Crustacea |
Daphnia magna |
Water flea |
44 |
|
RpS26 |
103 |
45 |
23 |
Litopenaeus vannamei |
Pacific white shrimp |
44 |
|
|
RpL10A |
42 |
36 |
22 |
||||
|
RpL23 |
139 |
51 |
22 |
Penaeus monodon |
Black tiger shrimp |
43 |
|
|
RpL36A |
105 |
44 |
22 |
Litopenaeus setiferus |
Northern white shrimp |
36 |
|
|
RpL39 |
51 |
26 |
22 |
||||
|
RpS17 |
112 |
70 |
22 |
Homarus americanus |
Atlantic lobster |
30 |
|
|
RpS27 |
80 |
42 |
22 |
Marsupenaeus japonicus |
Kuruma shrimp |
25 |
|
|
RpS30 |
89 |
72 |
22 |
Artemia franciscana |
Brine shrimp |
14 |
|
|
RpL36 |
87 |
64 |
21 |
Callinectes sapidus |
Blue crab |
13 |
|
|
RpL35 |
127 |
68 |
20 |
Eurydice pulchra ** |
Speckled sea louse |
4 |
|
|
|
|||||||
|
RpL35A |
78 |
58 |
20 |
Chelicerata |
Amblyomma americanum |
Lone star tick |
32 |
|
RpL37 |
80 |
43 |
20 |
Boophilus microplus |
Southern cattle tick |
29 |
|
|
RpL3 |
50 |
28 |
20 |
Rhipicephalus appendiculatus |
Brown ear tick |
21 |
|
|
RPL40**** |
128 |
22 |
20 |
||||
|
RpS29 |
56 |
30 |
20 |
Ornithodoros porcinus |
Tick |
19 |
|
|
RpS15A |
80 |
33 |
19 |
Sarcoptes scabiei |
Scabies mite |
13 |
|
|
RpL38 |
70 |
37 |
17 |
Amblyomma variegatum ** |
Tick |
2 |
|
|
RpS21 |
86 |
49 |
17 |
||||
|
RpS28 |
66 |
18 |
17 |
||||
|
RpL27 |
137 |
84 |
14 |
||||
|
RpLp2 |
83 |
59 |
12 |
||||
|
RpS27A**** |
152 |
27 |
12 |
||||
|
RpL22 |
69 |
23 |
9 |
||||
|
|
|||||||
|
Left: The inferred ribosomal protein sequences (amino acids) that were included in the concatenated dataset. Only ribosomal proteins present in the Folsomia candida EST dataset were included in the analysis. Occurrence*: The number of species for which was data available for a certain ribosomal protein. # of variable sites: positions that constitute more than one amino acid in the different alignments. Numbers were calculated in MEGA4 [61]. Right: All species that were included in the analyses. Species marked with ** were excluded from the final analyses because they contained too few sequences. Occurrence***: The number of genes (out of 48) that were available for a specific taxon. ****: RpS27a and RpL40 are fused to ubiquitin [25]. |
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|
Timmermans et al. BMC Evolutionary Biology 2008 8:83 doi:10.1186/1471-2148-8-83 |
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