Table 1 |
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|
Markers utilized in this study, their positions in the Rattus and Mus genomes, and their source. |
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|
Marker |
Rattus Chr. |
Rattus Mb |
Mus Chr. |
Mus Mb |
Marker Source |
|
|
|||||
|
Plagl1 |
1 |
7.9 |
10 |
12.8 |
This study |
|
Clptml1 |
1 |
30.5 |
13 |
74.1 |
PM_BWp0019B05 |
|
Mas1 |
1 |
42.1 |
17 |
11.7 |
[36] |
|
Pacrg |
1 |
44.4 |
17 |
10.3 |
PM_BWt0020A08 |
|
Tcp10b |
1 |
47.6 |
17 |
6.8 |
[32] |
|
Usp29 |
1 |
65.4 |
7 |
5.9 |
This study |
|
Zfp574 |
1 |
80.5 |
7 |
20.3 |
PM_BWt0030D07 |
|
Hnrpl |
1 |
84.0 |
7 |
24.2 |
PM_BWt0015D0f |
|
Q8C5Y2 |
1 |
91.8 |
7 |
43.2 |
PM_BWt0034E03 |
|
Myod1 |
1 |
96.9 |
7 |
46.3 |
This study |
|
Ube3a |
1 |
110.8 |
7 |
59.1 |
PM_BWt0035G08 |
|
Rab6ip1 |
1 |
167.6 |
7 |
109.7 |
PM_BWt0031E09 |
|
H19 |
1 |
202.8 |
7 |
137.0 |
[35] |
|
Prdx5 |
1 |
209.7 |
19 |
7.0 |
PM_BWt0010H02 |
|
Prpf19 |
1 |
213.6 |
19 |
11.0 |
PM_BWt0050D11 |
|
Xpnpep1 |
1 |
259.4 |
19 |
53.1 |
PM_BWt0029G03 |
|
Spz1 |
2 |
22.8 |
13 |
93.7 |
PM_BWt0006E03 |
|
Car1 |
2 |
88.1 |
3 |
14.7 |
PM_BWt0033B03 |
|
Tloc1 |
2 |
116.3 |
3 |
30.1 |
Contig [t0041H10] |
|
Golph4 |
2 |
166.7 |
3 |
75.1 |
PM_BWt0011G08 |
|
Atp1a1 |
2 |
196.6 |
3 |
101.0 |
PM_BWp0001H12 |
|
Unc5c |
2 |
239.4 |
3 |
140.4 |
PM_BWt0025F04 |
|
Fbxw5 |
3 |
3.7 |
2 |
25.4 |
Contig PM_BWt0016A08U |
|
Clp1 |
3 |
67.9 |
2 |
84.5 |
PM_BWt0033G11 |
|
Chst1 |
3 |
77.7 |
2 |
92.4 |
PM_BWp0021H02 |
|
Apip |
3 |
88.3 |
2 |
102.9 |
PM_BWt0003D08 |
|
Thbs1 |
3 |
103.9 |
2 |
117.8 |
PM_BWp0019F04 |
|
Adra1d |
3 |
119.2 |
2 |
131.1 |
[32] |
|
Dpm1 |
3 |
159.4 |
2 |
167.9 |
PM_BWt0028C07 |
|
Srpk2 |
4 |
6.9 |
5 |
23.0 |
Contig PM_BWt0030E08U |
|
Sri |
4 |
21.6 (Celera) |
5 |
8.1 |
PM_BWt0020G07 |
|
Ccdc132 |
4 |
28.3 |
6 |
3.5 |
PM_BWt0038C06 |
|
1700016G05Rik |
4 |
68.4 |
6 |
40.4 |
Contig [t0039B08] |
|
Gabarapl1 |
4 |
167.0 |
6 |
129.5 |
PM_BWt0019H08 |
|
Tram1 |
5 |
4.8 |
1 |
13.7 |
PM_BWt0037H08 |
|
Oprk1 |
5 |
14.0 |
1 |
5.6 |
This study |
|
Ube2j1 |
5 |
49.3 |
4 |
33.3 |
PM_BWp0021E08 |
|
Rnf20 |
5 |
66.4 |
4 |
49.5 |
PM_BWt0013E09 |
|
Ubxd5 |
5 |
152.9 |
4 |
133.4 |
PM_BWt0007G04 |
|
Spata21 |
5 |
160.0 |
4 |
140.0 |
PM_BWt0027G03 |
|
Mmel1 |
5 |
171.7 |
4 |
153.7 |
PM_BWt0028B02 |
|
Sos1 |
6 |
3.3 |
17 |
78.2 |
[40] |
|
Ppp1cb |
6 |
24.1 |
5 |
32.7 |
PM_BWp0006A12 |
|
Preb |
6 |
25.4 |
5 |
31.2 |
PM_BWt0037F10 |
|
Dnmt3a |
6 |
26.8 |
12 |
3.8 |
This study |
|
Allc |
6 |
46.4 |
12 |
29.1 |
PM_BWt0049G04 |
|
4930504H06Rik |
6 |
51.7 |
12 |
34.0 |
PM_BWt0033A03 |
|
Clec14a |
6 |
78.9 |
12 |
59.2 |
PM_BWp0007A11 |
|
Pygl |
6 |
92.3 |
12 |
71.1 |
PM_BWp0007B06 |
|
Pcnx |
6 |
105.7 |
12 |
82.8 |
Contig [t0010D02] |
|
1700001K19Rik |
6 |
135.3 |
12 |
111.1 |
Contig [t0029G05] |
|
Il23a |
7 |
1.6 |
10 |
128.0 |
[34] |
|
Stk11 |
7 |
11.1 |
10 |
79.5 |
PM_BWp0005E08 |
|
Hsp90b1 |
7 |
23.4 |
10 |
86.1 |
PM_BWp0013F08 |
|
Phkd1l1 |
7 |
80.3 |
15 |
44.3 |
Contig [T0025f09] |
|
C920006C10Rik |
7 |
103.2 |
15 |
65.6 |
PM_BWt0015A02 |
|
Adck5 |
7 |
114.7 |
15 |
76.4 |
PM_BWt0028A12 |
|
Mut |
9 |
15.8 |
17 |
40.4 |
Contig [t0024G12] |
|
Col9a1 |
9 |
22.9 |
1 |
24.4 |
[31] |
|
Col3a1 |
9 |
44.3 |
1 |
45.6 |
[31] |
|
Fn1 |
9 |
70.9 |
1 |
71.9 |
[32] |
|
Lama1 |
9 |
107.1 |
17 |
65.5 |
[32] |
|
Btbd12 |
10 |
11.8 |
16 |
3.7 |
PM_BWt0019F01 |
|
Gbl |
10 |
13.7 |
17 |
22.3 |
PM_BWp0005A03 |
|
Hba |
10 |
15.6 |
11 |
32.2 |
[31] |
|
Canx |
10 |
35.9 |
11 |
49.9 |
PM_BWp0001C07f |
|
Sparc |
10 |
40.9 |
11 |
55.0 |
[32] |
|
Trp53 |
10 |
56.4 |
11 |
69.2 |
M. McLachlan (pers. comm.) |
|
Mpo |
10 |
76.1 |
11 |
87.4 |
[32] |
|
HoxB |
10 |
85.1 |
11 |
96.0 |
[32] |
|
Gast |
10 |
89.3 |
11 |
100.0 |
[33] |
|
Myl4 |
10 |
93.7 |
11 |
104.4 |
[32] |
|
Scn4a |
10 |
95.8 |
11 |
106.1 |
[31] |
|
Sstr2 |
10 |
96.2 |
11 |
113.3 |
[33] |
|
P4hb |
10 |
110.0 |
11 |
120.2 |
[32] |
|
Arvcf |
11 |
846.0 |
16 |
18.3 |
PM_BWp0007D05 |
|
Flt1 |
12 |
7.9 |
5 |
146.5 |
PM_BWp0007C04 |
|
Lrch4 |
12 |
19.7 |
5 |
136.6 |
Contig PM_BWt0042B01 |
|
Piwil1 |
12 |
28.9 |
5 |
127.9 |
Contig PM_BWt0011G03 |
|
Mapkapk5 |
12 |
36.1 |
5 |
121.8 |
PM_BWt0019E09 |
|
Bcl2 |
13 |
12.7 |
1 |
106.5 |
[32] |
|
Glul |
13 |
65.9 |
1 |
155.7 |
[33] |
|
Acbd3 |
13 |
96.7 |
1 |
180.7 |
PM_BWP0009B01 |
|
Afp |
14 |
19.1 |
5 |
89.8 |
PM_BWp0002H11 |
|
Pcdcl2 |
14 |
34.2 |
5 |
75.6 |
PM_BWt0012A04 |
|
Hip2 |
14 |
45.4 |
5 |
64.3 |
PM_BWt0028D02 |
|
Xbp1 |
14 |
86.2 |
11 |
5.4 |
PM_BWp0012A03 |
|
Igfbp1 |
14 |
88.0 |
11 |
7.1 |
[32] |
|
Grb10 |
14 |
92.8 |
11 |
11.8 |
[17] |
|
Ugp2 |
14 |
102.1 |
11 |
21.2 |
PM_BWp0009C07 |
|
Ecd |
15 |
4.2 |
14 |
19.1 |
PM_BWt0026E07 |
|
Cma1 |
15 |
34.1 |
14 |
50.5 |
[31] |
|
Itm2b |
15 |
54.0 |
14 |
72.1 |
PM_BWp0020C01 |
|
9130404D08Rik |
16 |
19.9 |
8 |
72.9 |
PM_BWt0040G05 |
|
Spata4 |
16 |
35.3 |
8 |
56.1 |
contig [t0034B10] |
|
Mtus1 |
16 |
54.6 |
8 |
39.9 |
contig [too42G11] |
|
Adam3 |
16 |
71.7 |
8 |
23.4 |
contig [t0035F12] |
|
Sec61a2 |
17 |
83.5 |
2 |
5.8 |
PM_BWt0014H11U |
|
5430411K18Rik |
18 |
74.9 |
18 |
78.1 |
PM_BWt0031G08 |
|
Hps4 |
19 |
14.4 |
5 |
112.6 |
PM_BWp0006B12 |
|
Phkb |
19 |
22.3 |
8 |
85.1 |
PM_BWt0031G11 |
|
Elmod2 |
19 |
26.2 |
8 |
82.6 |
PM_BWt0036H11 |
|
|
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|
* Mb denotes the physical position in megabases on the Rattus and Mus chromosomes [15, 16]. ** Markers beginning in PM_BW or contig are EST clones developed at the Peromyscus Genetic Stock Center (Weston Glenn et al., submitted BMC Genomics). |
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|
Ramsdell et al. BMC Evolutionary Biology 2008 8:65 doi:10.1186/1471-2148-8-65 |
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