Table 1

Markers utilized in this study, their positions in the Rattus and Mus genomes, and their source.
Marker
 Rattus Chr.
 Rattus Mb
 Mus Chr.
 Mus Mb
 Marker Source
Plagl1
 1
 7.9
 10
 12.8
 This study
Clptml1
 1
 30.5
 13
 74.1
 PM_BWp0019B05
Mas1
 1
 42.1
 17
 11.7
 [36]
Pacrg
 1
 44.4
 17
 10.3
 PM_BWt0020A08
Tcp10b
 1
 47.6
 17
 6.8
 [32]
Usp29
 1
 65.4
 7
 5.9
 This study
Zfp574
 1
 80.5
 7
 20.3
 PM_BWt0030D07
Hnrpl
 1
 84.0
 7
 24.2
 PM_BWt0015D0f
Q8C5Y2
 1
 91.8
 7
 43.2
 PM_BWt0034E03
Myod1
 1
 96.9
 7
 46.3
 This study
Ube3a
 1
 110.8
 7
 59.1
 PM_BWt0035G08
Rab6ip1
 1
 167.6
 7
 109.7
 PM_BWt0031E09
H19
 1
 202.8
 7
 137.0
 [35]
Prdx5
 1
 209.7
 19
 7.0
 PM_BWt0010H02
Prpf19
 1
 213.6
 19
 11.0
 PM_BWt0050D11
Xpnpep1
 1
 259.4
 19
 53.1
 PM_BWt0029G03
Spz1
 2
 22.8
 13
 93.7
 PM_BWt0006E03
Car1
 2
 88.1
 3
 14.7
 PM_BWt0033B03
Tloc1
 2
 116.3
 3
 30.1
 Contig [t0041H10]
Golph4
 2
 166.7
 3
 75.1
 PM_BWt0011G08
Atp1a1
 2
 196.6
 3
 101.0
 PM_BWp0001H12
Unc5c
 2
 239.4
 3
 140.4
 PM_BWt0025F04
Fbxw5
 3
 3.7
 2
 25.4
 Contig PM_BWt0016A08U
Clp1
 3
 67.9
 2
 84.5
 PM_BWt0033G11
Chst1
 3
 77.7
 2
 92.4
 PM_BWp0021H02
Apip
 3
 88.3
 2
 102.9
 PM_BWt0003D08
Thbs1
 3
 103.9
 2
 117.8
 PM_BWp0019F04
Adra1d
 3
 119.2
 2
 131.1
 [32]
Dpm1
 3
 159.4
 2
 167.9
 PM_BWt0028C07
Srpk2
 4
 6.9
 5
 23.0
 Contig PM_BWt0030E08U
Sri
 4
 21.6 (Celera)
 5
 8.1
 PM_BWt0020G07
Ccdc132
 4
 28.3
 6
 3.5
 PM_BWt0038C06
1700016G05Rik
 4
 68.4
 6
 40.4
 Contig [t0039B08]
Gabarapl1
 4
 167.0
 6
 129.5
 PM_BWt0019H08
Tram1
 5
 4.8
 1
 13.7
 PM_BWt0037H08
Oprk1
 5
 14.0
 1
 5.6
 This study
Ube2j1
 5
 49.3
 4
 33.3
 PM_BWp0021E08
Rnf20
 5
 66.4
 4
 49.5
 PM_BWt0013E09
Ubxd5
 5
 152.9
 4
 133.4
 PM_BWt0007G04
Spata21
 5
 160.0
 4
 140.0
 PM_BWt0027G03
Mmel1
 5
 171.7
 4
 153.7
 PM_BWt0028B02
Sos1
 6
 3.3
 17
 78.2
 [40]
Ppp1cb
 6
 24.1
 5
 32.7
 PM_BWp0006A12
Preb
 6
 25.4
 5
 31.2
 PM_BWt0037F10
Dnmt3a
 6
 26.8
 12
 3.8
 This study
Allc
 6
 46.4
 12
 29.1
 PM_BWt0049G04
4930504H06Rik
 6
 51.7
 12
 34.0
 PM_BWt0033A03
Clec14a
 6
 78.9
 12
 59.2
 PM_BWp0007A11
Pygl
 6
 92.3
 12
 71.1
 PM_BWp0007B06
Pcnx
 6
 105.7
 12
 82.8
 Contig [t0010D02]
1700001K19Rik
 6
 135.3
 12
 111.1
 Contig [t0029G05]
Il23a
 7
 1.6
 10
 128.0
 [34]
Stk11
 7
 11.1
 10
 79.5
 PM_BWp0005E08
Hsp90b1
 7
 23.4
 10
 86.1
 PM_BWp0013F08
Phkd1l1
 7
 80.3
 15
 44.3
 Contig [T0025f09]
C920006C10Rik
 7
 103.2
 15
 65.6
 PM_BWt0015A02
Adck5
 7
 114.7
 15
 76.4
 PM_BWt0028A12
Mut
 9
 15.8
 17
 40.4
 Contig [t0024G12]
Col9a1
 9
 22.9
 1
 24.4
 [31]
Col3a1
 9
 44.3
 1
 45.6
 [31]
Fn1
 9
 70.9
 1
 71.9
 [32]
Lama1
 9
 107.1
 17
 65.5
 [32]
Btbd12
 10
 11.8
 16
 3.7
 PM_BWt0019F01
Gbl
 10
 13.7
 17
 22.3
 PM_BWp0005A03
Hba
 10
 15.6
 11
 32.2
 [31]
Canx
 10
 35.9
 11
 49.9
 PM_BWp0001C07f
Sparc
 10
 40.9
 11
 55.0
 [32]
Trp53
 10
 56.4
 11
 69.2
 M. McLachlan (pers. comm.)
Mpo
 10
 76.1
 11
 87.4
 [32]
HoxB
 10
 85.1
 11
 96.0
 [32]
Gast
 10
 89.3
 11
 100.0
 [33]
Myl4
 10
 93.7
 11
 104.4
 [32]
Scn4a
 10
 95.8
 11
 106.1
 [31]
Sstr2
 10
 96.2
 11
 113.3
 [33]
P4hb
 10
 110.0
 11
 120.2
 [32]
Arvcf
 11
 846.0
 16
 18.3
 PM_BWp0007D05
Flt1
 12
 7.9
 5
 146.5
 PM_BWp0007C04
Lrch4
 12
 19.7
 5
 136.6
 Contig PM_BWt0042B01
Piwil1
 12
 28.9
 5
 127.9
 Contig PM_BWt0011G03
Mapkapk5
 12
 36.1
 5
 121.8
 PM_BWt0019E09
Bcl2
 13
 12.7
 1
 106.5
 [32]
Glul
 13
 65.9
 1
 155.7
 [33]
Acbd3
 13
 96.7
 1
 180.7
 PM_BWP0009B01
Afp
 14
 19.1
 5
 89.8
 PM_BWp0002H11
Pcdcl2
 14
 34.2
 5
 75.6
 PM_BWt0012A04
Hip2
 14
 45.4
 5
 64.3
 PM_BWt0028D02
Xbp1
 14
 86.2
 11
 5.4
 PM_BWp0012A03
Igfbp1
 14
 88.0
 11
 7.1
 [32]
Grb10
 14
 92.8
 11
 11.8
 [17]
Ugp2
 14
 102.1
 11
 21.2
 PM_BWp0009C07
Ecd
 15
 4.2
 14
 19.1
 PM_BWt0026E07
Cma1
 15
 34.1
 14
 50.5
 [31]
Itm2b
 15
 54.0
 14
 72.1
 PM_BWp0020C01
9130404D08Rik
 16
 19.9
 8
 72.9
 PM_BWt0040G05
Spata4
 16
 35.3
 8
 56.1
 contig [t0034B10]
Mtus1
 16
 54.6
 8
 39.9
 contig [too42G11]
Adam3
 16
 71.7
 8
 23.4
 contig [t0035F12]
Sec61a2
 17
 83.5
 2
 5.8
 PM_BWt0014H11U
5430411K18Rik
 18
 74.9
 18
 78.1
 PM_BWt0031G08
Hps4
 19
 14.4
 5
 112.6
 PM_BWp0006B12
Phkb
 19
 22.3
 8
 85.1
 PM_BWt0031G11
Elmod2
 19
 26.2
 8
 82.6
 PM_BWt0036H11

* Mb denotes the physical position in megabases on the Rattus and Mus chromosomes [15, 16]. ** Markers beginning in PM_BW or contig are EST clones developed at the Peromyscus Genetic Stock Center (Weston Glenn et al., submitted BMC Genomics).

Ramsdell et al. BMC Evolutionary Biology 2008 8:65   doi:10.1186/1471-2148-8-65