Table 1

Summary statistics and tests of recombination for the three gene regions analysed in this study. Alternative values of Tajima's D and FST are for estimates including or excluding P. muralis. N, number of haplotypes sequenced; H, number of haplotypes detected. S, number of segregating sites; π, nucleotide diversity; θ, population mutation parameter, calculated according to Watterson [64]; Rm, minimum number of recombination events [24]; Φw statistic p-value calculated according to Bruen et al. [25].

Gene

Taxa

Length (bp)

N

Polymorphism

Tajima's D

Recombination

FST



H

S

π

θ

Rm

Φw P-value


ND4

All

534

78

54

187

0.10738

0.07107

0.67941/0.65100

-

-

0.89885/0.89707

P. bocagei

5

3

2

0.00187

0.00180

0.24314

P. carbonelli

5

5

7

0.00562

0.00629

-0.74682

P. vaucheri

7

4

32

0.02836

0.02446

0.45857

P. hispanica type 1A

8

3

5

0.00461

0.00361

1.26023

P. hispanica type 1B

6

5

9

0.00687

0.00738

-0.41545

P. hispanica type 2

8

7

45

0.03023

0.03250

-0.48372

P. hispanica sensu stricto

8

6

17

0.01318

0.01228

0.37704

P. hispanica type 3

5

4

14

0.01273

0.01258

-0.40617

P. hispanica Galera

8

5

18

0.00876

0.01300

-1.68765*

P. hispanica Jebel Sirwah

6

4

3

0.00225

0.00246

-0.44736

P. hispanica Tunísia

5

4

9

0.00974

0.00809

1.44761

P. muralis

7

4

14

0.01427

0.01070

1.86716

6-Pgdint7

All

414

136

60

91

0.01721

0.04007

-1.89302**/-2.02372*

7

0.276

0.61498/0.46435

P. bocagei

10

2

1

0.00129

0.00085

1.30268

P. carbonelli

10

5

7

0.00644

0.00598

0.46601

P. vaucheri

12

7

11

0.00659

0.00880

-0.87808

P. hispanica type 1A

12

6

11

0.00853

0.00880

-0.04145

P. hispanica type 1B

10

8

16

0.01390

0.01366

-0.03458

P. hispanica type 2

14

10

24

0.01680

0.01823

-0.62704

P. hispanica sensu stricto

14

9

15

0.00805

0.00993

-0.77168

P. hispanica type 3

10

7

12

0.00859

0.01025

-0.49424

P. hispanica Galera

12

3

3

0.00131

0.00205

-1.17901

P. hispanica Jebel Sirwah

12

3

6

0.00677

0.00480

1.63651

P. hispanica Tunísia

10

6

4

0.00462

0.00512

-0.40924

P. muralis

10

3

2

0.00215

0.00171

0.83017

β-fibint7

All

507

140

67

100

0.01269

0.03576

-2.15863**/-2.29815**

8

0.194

0.51125/0.40491

P. bocagei

10

4

5

0.00197

0.00349

-1.74110*

P. carbonelli

10

7

18

0.01267

0.01255

-0.20511

P. vaucheri

10

6

20

0.01179

0.01394

-0.72606

P. hispanica type 1A

16

11

25

0.00830

0.01486

-1.72813

P. hispanica type 1B

12

8

13

0.00529

0.08490

-1.59698

P. hispanica type 2

12+

8

18

0.01133

0.01176

-0.15948

P. hispanica sensu stricto

14

9

16

0.00759

0.01013

-0.61276

P. hispanica type 3

10

7

20

0.01315

0.01394

-0.26800

P. hispanica Galera

12

6

9

0.00493

0.00588

-1.30703

P. hispanica Jebel Sirwah

12

2

1

0.00033

0.00065

-1.14053

P. hispanica Tunísia

10

1

0

0.00000

0.00000

-

P. muralis

12

2

1

0.00033

0.00065

-1.14053


* p < 0.05; ** p < 0.01; +2 alleles were discarded because of a very large deletion.

Pinho et al. BMC Evolutionary Biology 2008 8:63   doi:10.1186/1471-2148-8-63

Open Data