Table 2

Domain Versatility Indices (DV I) for 30 selected Pfam A domains. DV I, the domain versatility index. Err, the calculated error of the regression coefficient. Description, description as taken from the Pfam database.

Domains with a low DV I

Domain

DVI

± SE

Description


PF02861.9

0.231

0.015

Clp_N; Clp amino terminal domain

PF06815.2

0.236

0.014

RVT_connect; Reverse transcriptase connection domain

PF00353.9

0.244

0.022

HemolysinCabind; Hemolysin-type calcium-binding repeat (2 copies)

PF00030.8

0.269

0.021

Crystall; Beta/Gamma crystallin

PF03130.5

0.275

0.020

HEAT_PBS; PBS lyase HEAT-like repeat

PF00009.15

0.276

0.006

GTP_EFTU; Elongation factor Tu GTP binding domain

PF00402.7

0.282

0.020

Calponin; Calponin family repeat

PF00954.11

0.288

0.028

S_locus glycop; S-locus glycoprotein family

PF00228.9

0.296

0.018

Bowman-Birk_leg; Bowman-Birk serine protease inhibitor family

PF02012.9

0.306

0.030

BNR; BNR/Asp-box repeat

Domains with a medium DV I

Domain

DVI

± SE

Description


PF02362.12

0.626

0.014

B3; B3 DNA binding domain

PF01825.10

0.627

0.035

GPS; Latrophilin/CL-1-like GPS domain

PF07721.4

0.627

0.025

TPR_4; Tetratricopeptide repeat

PF01302.13

0.628

0.031

CAP_GLY; CAP-Gly domain

PF00176.12

0.630

0.009

SNF2_N; SNF2 family N-terminal domain

PF00567.14

0.631

0.039

TUDOR; Tudor domain

PF01390.8

0.631

0.044

SEA; SEA domain

PF07686.5

0.632

0.016

V-set; Immunoglobulin V-set domain

PF00067.11

0.633

0.012

p450; Cytochrome P450

PF00165.11

0.633

0.009

HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family

PF00249.19

0.635

0.014

Myb_DNA-binding; Myb-like DNA-binding domain

Domains with a high DV I

Domain

DVI

± SE

Description


PF00004.18

0.826

0.006

AAA; ATPase family associated with various cellular activities (AAA)

PF00583.13

0.827

0.006

Acetyltransf_1; Acetyltransferase (GNAT) family

PF00250.7

0.828

0.011

Fork_head; Fork head domain

PF01926.11

0.828

0.011

MMR_HSR1; GTPase of unknown function

PF00001.11

0.830

0.011

7tm_1; 7 transmembrane receptor (rhodopsin family)

PF01464.9

0.846

0.025

SLT; Transglycosylase SLT domain

PF04055.9

0.857

0.006

Radical_SAM; Radical SAM superfamily

PF00496.11

0.858

0.015

SBP_bac_5; Bacterial extracellular solute-binding proteins, family 5 Middle

PF02393.6

0.872

0.040

US22; US22 like

PF08241.1

0.911

0.007

Methyltransf_11; Methyltransferase domain


Weiner et al. BMC Evolutionary Biology 2008 8:285   doi:10.1186/1471-2148-8-285

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