Table 2 |
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|
Hits of BLASTp similarity between Tat and other Ty3/Gypsy and Retroviridae gags |
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|
Query: Retrosor1 gag |
Query: Tat4-1 gag |
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|
|
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|
Element |
Score |
E-value |
Element |
Score |
E-value |
|
|
|||||
|
Diaspora |
50.4 |
5e-08 |
*KoRV |
34.3 |
0.003 |
|
Calypso5-1 |
42.4 |
1e-05 |
*GALV |
33.5 |
0.005 |
|
Ulysses |
40.0 |
6e-05 |
*HERV-K10 |
32.0 |
0.015 |
|
*GALV |
39.7 |
8e-05 |
*PERV-MSL |
30.8 |
0.033 |
|
*KoRV |
39.3 |
1e-04 |
*SRV-1 |
29.6 |
0.074 |
|
*MdEV |
38.1 |
2e-04 |
*MPMV |
29.6 |
0.074 |
|
*PERV-MSL |
37.7 |
3e-04 |
*MuLV |
29.6 |
0.074 |
|
Cer3 |
36.2 |
0.001 |
*SERV |
29.3 |
0.097 |
|
Cyclops-2 |
36.2 |
0.001 |
*JSRV |
28.9 |
0.13 |
|
*MuLV |
34.3 |
0.003 |
|||
|
Sushi-ichi |
32.3 |
0.013 |
|||
|
*BAEVM |
28.9 |
0.15 |
|||
|
|
|||||
|
We only summarize the most significant (top) hits of similarity obtained with each search. Retroviridae gags belonging to class I are indicated with asterisks. |
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|
Llorens et al. BMC Evolutionary Biology 2008 8:276 doi:10.1186/1471-2148-8-276 |
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