Table 2

Number of sequences showing only the refined NKL amino acid patterns.

Pattern

HoxL (202)

NKL (88)

PRD (200)

LIM (66)

POU (83)

HNF (15)

SINE (23)

TALE (66)

CUT (20)

PROS (3)

ZF (94)

CERS (10)

Uncl. (288)


DLX-BARX

0

40

0

0

0

0

0

0

0

0

0

0

2

EN

11

28

0

0

0

0

1

0

3

0

0

0

21

NOTO

0

1

0

0

0

0

0

0

0

0

0

0

2

NANOG

6

8

0

0

0

0

0

0

0

0

0

0

1

VENTX

8

6

0

0

0

0

0

0

3

0

0

0

6


Uncl. – unclassified sequences. The total number of sequences in each class is shown in parentheses.

DLX-BARX – [AKST] [QDENPS] [LAST] [Q] [V]; EN – [AKSTN] [DENPS] [LAST] [Q] [VI];

NOTO – [AKST] [DENPS] [LASTN] [Q] [V]; NANOG – [AKST] [DENPSY] [LASTK] [Q] [V];

VENTX – [AKST] [DENPS] [LASTV] [Q] [VI]

Fonseca et al. BMC Evolutionary Biology 2008 8:200   doi:10.1186/1471-2148-8-200

Open Data