Additional File 2.

Array data without mask. Processed data for the 48 Affymetrix arrays used to analyze the seven species after Loess smoothing and background correction + normalization using MAS5 without masking (see text). The list includes genes with protein coding regions from the Drosophila melanogaster genome annotation (release 4.3). Columns are as follows: A. Ensembl - the CG/CR annotation provided by Affymetrix, B. Chromosome, C. Strand - + sense/- anti-sense, D/E. Start/Stop from release 4.3, F. Affymetrix Probe Set ID, G-I. Replicates for Drosophila melanogaster, J-L. D. sechellia, M-0. D. mauritiana, P-R., D. teissieri, S-U. D. yakuba, V-Y. D. santomea, Z-BB Replicates for the 10 crosses (3 each) of D. simulans.

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Mezey et al. BMC Evolutionary Biology 2008 8:2   doi:10.1186/1471-2148-8-2