Table 1 |
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|
Ecological and genomic context of the fur homologues |
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|
species and strains designation |
RefSeq |
genome size (Mbps) |
%GC |
Fur homologues |
group |
fur %GC |
species habitat |
|
|
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|
Acidothermus cellulolyticus 11B |
NC_008578 |
2,4 |
67 |
Acel_2095 |
A |
67,1 |
aquatic; aerobic; thermophilic |
|
Acel_0061 |
E |
64,9 |
|||||
|
Acel_2085 |
B |
65,5 |
|||||
|
Arthrobacter aurescens TC1 |
NC_008711 |
4,6 |
62 |
AAur_3058 |
A |
60,6 |
terrestrial – can transform heavy metals into less toxic forms; aerobic; mesophilic |
|
AAur_2630 |
B |
61,1 |
|||||
|
Arthrobacter sp. FB24 |
NC_008541 |
4,7 |
66 |
Arth_3077 |
A |
65,8 |
terrestrial – high degree of tolerance to chromium and other metals, may be radiation resistant and is a hydrocarbon degrader; mesophilic |
|
Arth_2638 |
B |
68,2 |
|||||
|
Bifidobacterium adolescentis ATCC 15703 |
NC_008618 |
2,1 |
59 |
BAD_0517 |
B |
62,2 |
host-associated – normal inhabitant of the healthy human gut; anaerobic; mesophilic |
|
Bifidobacterium longum NCC2705 |
NC_004307 |
2,3 |
60 |
BL1128 |
B |
61,2 |
host-associated – normal component of gut flora; anaerobic; mesophilic |
|
Corynebacterium diphtheriae NCTC 13129 |
NC_002935 |
2,5 |
54 |
DIP1710 |
B |
51,5 |
multiple – human pathogen, causative agent of diphtheria; aerobic; mesophilic |
|
Corynebacterium efficiens YS-314 |
NC_004369 |
3,1 |
63 |
CE2180 |
B |
63,1 |
multiple; facultative aerobic; mesophilic |
|
Corynebacterium glutamicum ATCC 13032 |
NC_006958 |
3,3 |
54 |
NCgl2200 |
B |
53,3 |
multiple; facultative aerobic; mesophilic |
|
Corynebacterium jeikeium K411 |
NC_007164 |
2,5 |
61 |
jk0612 |
B |
62,5 |
multiple – member of the human skin flora, opportunistic pathogen; facultative aerobic; mesophilic |
|
Frankia alni ACN14a |
NC_008278 |
7,5 |
73 |
FRAAL3168 |
A |
72,0 |
free-living or in symbiosis with plants roots; aerobic; mesophilic |
|
FRAAL0074 |
B |
72,0 |
|||||
|
FRAAL5117 |
C |
71,4 |
|||||
|
FRAAL2798 |
E |
76,4 |
|||||
|
Frankia sp. CcI3 |
NC_007777 |
5,4 |
70 |
Francci3_3112 |
C |
70,3 |
free-living or in symbiosis with plants roots; aerobic; mesophilic |
|
Francci3_2661 |
E |
73,9 |
|||||
|
Francci3_0061 |
B |
71,8 |
|||||
|
Frankia sp. EAN1pec |
NZ_AAII00000000 |
9,0 |
71 |
Franean1_1532 |
A |
70,3 |
free-living or in symbiosis with plants roots; aerobic; mesophilic |
|
Franean1_1806 |
C |
73,2 |
|||||
|
Franean1_6149 |
E |
72,4 |
|||||
|
Franean1_7263 |
B |
74,1 |
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|
Leifsonia xyli subsp. xyli str. CTCB07 |
NC_006087 |
2,6 |
68 |
Lxx02790 |
A |
70 |
host-associated; plant pathogen; aerobic; mesophilic |
|
Lxx25010 |
B |
69,1 |
|||||
|
Mycobacterium avium 104 |
NC_008595 |
5,5 |
69 |
MAV_2752 |
A |
68,9 |
host-associated – mammal pathogen; aerobic; mesophilic |
|
MAV_2036 |
B |
68,4 |
|||||
|
Mycobacterium avium subsp. paratuberculosis K-10 |
NC_002944 |
4,8 |
69 |
MAP1669c |
A |
68,7 |
multiple – mammal pathogen, causative agent of Johne's disease or paratuberculosis; aerobic; mesophilic |
|
MAP2139 |
B |
67,9 |
|||||
|
Mycobacterium bovis AF2122/97 |
NC_002945 |
4,3 |
66 |
Mb1944c |
A |
62,3 |
host-associated – mammal pathogen, causative agent of classic bovine tuberculosis; aerobic; mesophilic |
|
Mb2380 |
B |
62,8 |
|||||
|
Mycobacterium bovis BCG str. Pasteur |
NC_008769 |
4,4 |
66 |
BCG_1948c |
A |
62,0 |
host-associated – mammal pathogen, causative agent of classic bovine tuberculosis; aerobic; mesophilic |
|
BCG_2373 |
B |
62,8 |
|||||
|
Mycobacterium leprae TN |
NC_002677 |
3,3 |
58 |
ML0824 |
B |
59,1 |
host-associated – human pathogen, causative agent of leprosy; aerobic; mesophilic |
|
Mycobacterium smegmatis str. MC2 155 |
NC_008596 |
7,0 |
67 |
MSMEG_6253 |
A |
67,3 |
host-associated – human pathogen; aerobic; mesophilic |
|
MSMEG_6383 |
A |
70,6 |
|||||
|
MSMEG_3460 |
A |
64,9 |
|||||
|
MSMEG_4487 |
B |
70,6 |
|||||
|
Mycobacterium sp. JLS |
NC_009077 |
6,0 |
68 |
Mjls_2712 |
A |
68,5 |
multiple; mesophilic |
|
Mjls_5253 |
A |
72,7 |
|||||
|
Mjls_3458 |
B |
71,1 |
|||||
|
Mycobacterium sp. KMS |
NC_008705 |
5,7 |
68 |
Mkms_2726 |
A |
68,8 |
multiple; mesophilic |
|
Mkms_4974 |
A |
72,2 |
|||||
|
Mkms_3510 |
B |
71,5 |
|||||
|
Mycobacterium sp. MCS |
NC_008146 |
5,7 |
69 |
Mmcs_2681 |
A |
66,5 |
multiple; mesophilic |
|
Mmcs_4885 |
A |
72,2 |
|||||
|
Mmcs_3447 |
B |
71,5 |
|||||
|
Mycobacterium tuberculosis CDC1551 |
NC_002755 |
4,4 |
66 |
MT1960 |
A |
62,3 |
host-associated – human pathogen, causative agent of tuberculosis; aerobic; mesophilic |
|
MT2428 |
B |
62,6 |
|||||
|
Mycobacterium tuberculosis H37Rv |
NC_000962 |
4.4 |
66 |
Rv1909c |
A |
62,3 |
host-associated – human pathogen, causative agent of tuberculosis; aerobic; mesophilic |
|
Rv2359 |
B |
62,6 |
|||||
|
Mycobacterium ulcerans Agy99 |
NC_008611 |
5,6 |
66 |
MUL_2189 |
A |
63,8 |
host-associated – human pathogen, causative agent of Buruli or Bairnsdale ulcer; aerobic; mesophilic |
|
MUL_3612 |
B |
65,2 |
|||||
|
Mycobacterium vanbaalenii PYR-1 |
NC_008726 |
6,5 |
68 |
Mvan_2983 |
A |
69,3 |
multiple; aerobic; mesophilic |
|
Mvan_3209 |
A |
65,8 |
|||||
|
Mvan_3820 |
B |
67,9 |
|||||
|
Nocardia farcinica IFM 10152 |
NC_006361 |
6,0 |
71 |
nfa3250 |
A |
75,0 |
multiple – opportunistic pathogens in a broad range of species; aerobic; mesophilic |
|
nfa29490 |
A |
68,5 |
|||||
|
nfa14570 |
B |
70,2 |
|||||
|
Nocardioides sp. JS614 |
NC_008699 |
5,0 |
72 |
Noca_0839 |
A |
74,5 |
terrestrial; aerobic; mesophilic |
|
Noca_0874 |
A |
75,1 |
|||||
|
Noca_4251 |
E |
70,2 |
|||||
|
Noca_1934 |
B |
74,0 |
|||||
|
Propionibacterium acnesKPA171202 |
NC_006085 |
2,6 |
60 |
PPA0948 |
B |
57,0 |
host-associated – opportunistic human pathongen, causative agent of acne; anaerobic; mesophilic |
|
Rhodococcus sp. RHA1 |
NC_008268 |
7,8 |
68 |
RHA1_ro04308 |
A |
67,5 |
terrestrial; aerobic; mesophilic |
|
RHA1_ro05274 |
A |
66,2 |
|||||
|
RHA1_ro01222 |
B |
67,4 |
|||||
|
Rubrobacter xylanophilus DSM 9941 |
NC_008148 |
3,2 |
71 |
Rxyl_1228 |
- |
67,6 |
specialized – exhibits high tolerance to radiation; aerobic; thermophilic |
|
Rxyl_1140 |
- |
68,0 |
|||||
|
Rxyl_1144 |
- |
75,6 |
|||||
|
Streptomyces avermitilis MA-4680 |
NC_003155 |
9,0 |
71 |
SAV3053 |
D |
71,9 |
multiple – mainly found in the soil; aerobic; mesophilic |
|
SAV4029 |
E |
64,8 |
|||||
|
SAV5631 |
B |
70,7 |
|||||
|
Streptomyces coelicolor A3(2) |
NC_003888 |
8,7 |
72 |
SCO0561 |
A |
74,3 |
multiple – mainly found in the soil; aerobic; mesophilic |
|
SCO5206 |
D |
72,2 |
|||||
|
SCO4180 |
E |
66,4 |
|||||
|
SCO2508 |
B |
72,6 |
|||||
|
Thermobifida fusca YX |
NC_007333 |
3,6 |
68 |
Tfu_0145 Tfu_0856 |
A B |
68,8 64,6 |
multiple – mainly found on self-heated organic materials, its spores are known to cause allergic respiratory diseases; aerobic; thermophilic |
|
Tropheryma whipplei TW08/27 |
NC_004551 |
0,9 |
46 |
- |
- |
Host-associated – human pathogen, causative agent of Whipple's disease; aerobic; mesophilic |
|
|
Tropheryma whipplei str. Twist |
NC_004572 |
0,9 |
46 |
- |
- |
Host-associated – human pathogen, causative agent of Whipple's disease; aerobic; mesophilic |
|
|
|
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|
Santos et al. BMC Evolutionary Biology 2008 8:185 doi:10.1186/1471-2148-8-185 |
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