Research article
Broadly sampled multigene trees of eukaryotes
- † Equal contributors
1 Department of Biological Sciences and Center for Comparative Genomics, University of Iowa, Iowa City, Iowa 52242, USA
2 Department of Biological Sciences, Smith College, Northampton, MA 01063, USA
3 American Type Culture Collection, P.O. Box 1549, Manassas, VA 20108, USA
4 Marine Biological Laboratory, Woods Hole, MA 02543, USA
5 Bigelow Laboratory for Ocean Sciences, 180 West Boothbay Harbor, ME 04575, USA
BMC Evolutionary Biology 2008, 8:14 doi:10.1186/1471-2148-8-14
Published: 18 January 2008Additional files
Additional file 1:
Table 1. Table of taxa sampled and sources of genes.
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Additional file 2:
Figure 4. Likelihood analysis of the 105-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with RaxML. See text and Figure 2 for additional notes.
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Additional file 3:
Figure 5. Bayesian analyses of the 105-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.
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Additional file 4:
Figure 6. Bayesian analyses of the 105-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.
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Additional file 5:
Figure 7. Likelihood analysis of the 105-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with PhyML. See text and Figure 2 for additional notes.
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Additional file 6:
Figure 8. Likelihood analysis of the 92-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with RaxML. See text and Figure 2 for additional notes.
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Additional file 7:
Figure 9. Bayesian analyses of the 92-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.
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Additional file 8:
Figure 10. Bayesian analyses of the 92-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.
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Additional file 9:
Figure 11. Likelihood analysis of the 92-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with PhyML. See text and Figure 2 for additional notes.
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Additional file 10:
Figure 12. Bayesian analysis of 93 actin amino acid sequences that are in the 105 multigene taxon analysis, performed with MrBayes. See text and Figure 2 for additional notes.
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Additional file 11:
Figure 13. Bayesian analysis of 96 alpha-tubulin amino acid sequences that are in the 105 multigene taxon analysis, performed with MrBayes. See text and Figure 2 for additional notes.
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Additional file 12:
Figure 14. Bayesian analysis of 98 beta-tubulin amino acid sequences that are in the 105 multigene taxon analysis, performed with MrBayes. See text and Figure 2 for additional notes.
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