|
Taxon and sequence list |
||||
| Accession numbers |
||||
|
|
||||
| Higher classification |
Taxon ID |
28S |
18S |
Voucher |
|
|
||||
| Bilateria |
||||
| Annelida |
Proceraea cornuta |
AF212165 |
AF212179 |
|
| Annelida |
Urechis caupo |
AF342804 |
AF342805 |
|
| Arthropoda |
Limulus polyphemus |
AF212167 |
U91490 |
|
| Arthropoda |
Tenebrio sp./Tenebrio molitor |
AY210843 |
X07801 |
|
| Brachiopoda |
Phoronis vancouverensis |
AF342797 |
U12648 |
|
| Chordata |
Oncorhynchus sp./O. kisutch |
U34341 |
AF030250 |
|
| Chordata |
Petromyzon marinus |
AF061798 |
M97575.1 |
|
| Chordata |
Raja schmidti |
AF278683 |
AF278682 |
|
| Chordata |
Triakis semifasciata |
AF212182 |
AF212180 |
|
| Echinodermata |
Strongylocentrotus purpuratus |
AF212171 |
L28056. |
|
| Hemichordata |
Cephalodiscus gracilis |
AF212172 |
AF236798 |
|
| Hemichordata |
Harrimania sp. |
AF212173 |
AF236799 |
|
| Hemichordata |
Ptychodera flava |
AF212176 |
AF278681 |
|
| Hemichordata |
Ptychoderidae |
AF278684 |
D14359 |
|
| Hemichordata |
Saccoglossus kowalevskii |
AF212175 |
L28054 |
|
| Kinorhyncha |
Pycnophyes sp.Tjarno |
AY859597 |
AY859598 |
|
| Mollusca |
Parvicardium minimum |
DQ279966 |
DQ279942 |
|
| Mollusca |
Placopecten magellanicus |
AF342798 |
X53899 |
|
| Nematoda |
Caenorhabditis elegans |
X03680 |
X03680 |
|
| Nematomorpha |
Chordodes morgani |
AF342787 |
AF036639 |
|
| Nemertea |
Amphiporus sp. |
AF342786 |
AF119077 |
|
| Nemertodermatida |
Meara stichopi |
AY157605 |
AF119085 |
|
| Onychophora |
Peripatus sp. |
AY210836 |
AY210837 |
|
| Platyhelminthes |
Diclidophora denticulata |
AY157169 |
AJ228779 |
|
| Platyhelminthes |
Stenostomum leucops |
AY157151 |
D85095 |
|
| Platyhelminthes |
Stylochus zebra |
AF342800 |
AF342801 |
|
| Priapulida |
Priapulus caudatus |
AY210840 |
Z38009 |
|
| Sipuncula |
Phascolopsis gouldii |
AF342795 |
AF342796 |
|
| Tardigrada |
Milnesium.sp.\M. tardigradum |
AY210826 |
U49909 |
|
| Urochordata |
Styela plicata |
AF158724 |
L12444 |
|
| Urochordata |
Thalia democratica |
AF158725 |
D14366 |
|
| Cnidaria |
||||
| Polypodiozoa |
Polypodium (Host: Acipenser ruthenus) |
EU272585 |
EU272630 |
|
| Polypodiozoa |
Polypodium (Host: Polyodon spathula) |
EU272629 |
||
| Polypodiozoa |
Polypodium (Host:Scaphirhynchus platorynchus) |
EU272586 |
||
| Anthozoa, Antipatharia |
Antipathes galapagensis |
AY026365 |
AF100943 |
|
| Anthozoa, Scleractinia |
Montastraea franksi |
AY026375 |
AY026382 |
|
| Cubozoa, Carybdeidae |
Carybdea rastonii |
AY920787 |
AF358108 |
|
| Cubozoa, Carybdeidae |
Darwin carybdeid sp. |
AY920788 |
AF358105 |
|
| Cubozoa, Carybdeidae |
Tripedalia cystophora |
EU272595 |
EU272637 |
|
| Cubozoa, Chirodropidae |
Chironex fleckeri |
AY920785 |
AF358104 |
|
| Cubozoa, Chirodropidae |
Chiropsalmus sp. |
AY920786 |
AF358103 |
|
| Hydrozoa, Capitata |
Dipurena ophiogaster |
EU272560 |
EU272615 |
KUNHM 2803 |
| Hydrozoa, Capitata |
Ectopleura dumortieri |
EU272561 |
EU272616 |
|
| Hydrozoa, Capitata |
Euphysora bigelowi |
EU272563 |
EU272618 |
KUNHM 2829 |
| Hydrozoa, Capitata |
Moerisia sp. |
AY920801 |
AF358083 |
|
| Hydrozoa, Capitata |
Pennaria disticha |
EU272581 |
AY920762 |
|
| Hydrozoa, Capitata |
Polyorchis penicillatus |
AF358090 |
||
| Hydrozoa, Capitata |
Porpita sp. |
AY920803 |
AF358086 |
|
| Hydrozoa, Capitata |
Ralpharia gorgoniae |
EU272590 |
EU272633 |
KUNHM 2778 |
| Hydrozoa, Capitata |
Scrippsia pacifica |
AY920804 |
AF358091 |
|
| Hydrozoa, Capitata |
Solanderia ericopsis |
EU272593 |
EU272636 |
MHNG INVE29593 |
| Hydrozoa, Capitata |
Velella sp. |
EU272597 |
AF358087 |
|
| Hydrozoa, Capitata |
Zanclea prolifera |
EU272598 |
EU272639 |
KUNHM 2793 |
| Hydrozoa, Capitata |
Zyzzyzus warreni |
EU272599 |
EU272640 |
KUNHM 2777 |
| Hydrozoa, Capitata |
Candelabrum cocksii |
AY920796 |
AY920758 |
MHNG INVE29531 |
| Hydrozoa, Capitata |
Cladocoryne floccosa |
EU272551 |
EU272608 |
|
| Hydrozoa, Filifera |
Bimeria vestita |
EU272548 |
EU272605 |
|
| Hydrozoa, Filifera |
Bougainvillia carolinensis |
EU272549 |
EU272606 |
|
| Hydrozoa, Filifera |
Brinckmannia hexactinellidophila |
EU272550 |
EU272607 |
MHNG INVE38148 |
| Hydrozoa, Filifera |
Clava multicornis |
EU272552 |
EU272609 |
|
| Hydrozoa, Filifera |
Clavactinia gallensis |
EU272553 |
EU272610 |
MHNG INVE33470 |
| Hydrozoa, Filifera |
Cordylophora caspia |
EU272556 |
EU272612 |
|
| Hydrozoa, Filifera |
Corydendrium sp. |
EU272557 |
EU272613 |
KUNHM 2764 |
| Hydrozoa, Filifera |
Dicoryne conybearei |
EU272559 |
EU272614 |
MHNG INVE32949 |
| Hydrozoa, Filifera |
Eudendrium.racemosum |
EU272562 |
EU272617 |
|
| Hydrozoa, Filifera |
Fabienna sphaerica |
AY920797 |
AY920767 |
|
| Hydrozoa, Filifera |
Garveia annulata/Garveia sp. |
EU272564 |
AY920766 |
KUNHM 2860 |
| Hydrozoa, Filifera |
Hydra circumcincta |
AY026371 |
AF358080 |
|
| Hydrozoa, Filifera |
Hydractinia symbiolongicarpus |
EU272568 |
EU272621 |
|
| Hydrozoa, Filifera |
Hydrichthella epigorgia |
EU272569 |
EU272622 |
KUNHM 2665 |
| Hydrozoa, Filifera |
Hydrichthys boycei |
EU272570 |
MHNG INVE37417 |
|
| Hydrozoa, Filifera |
Koellikerina fasciculata |
EU272571 |
EU272623 |
|
| Hydrozoa, Filifera |
Leuckartiara octona |
EU272573 |
EU272624 |
|
| Hydrozoa, Filifera |
Lizzia blondina |
EU272574 |
EU272625 |
|
| Hydrozoa, Filifera |
Pachycordyle pusilla |
EU272579 |
EU272627 |
MHNG INVE32953 |
| Hydrozoa, Filifera |
Pandea sp. |
EU272580 |
AY920765 |
|
| Hydrozoa, Filifera |
Podocoryne carnea |
AY920802 |
AF358092 |
|
| Hydrozoa, Filifera |
Proboscidactyla ornata |
EU272587 |
EU272631 |
KUNHM 2767 |
| Hydrozoa, Filifera |
Pruvotella grisea |
EU272588 |
EU272632 |
MHNG INVE34436 |
| Hydrozoa, Filifera |
Rathkea octopunctata |
EU272591 |
EU272634 |
KUMIP 314321 |
| Hydrozoa, Filifera |
Rhizogeton nudus |
EU272592 |
EU272635 |
MHNG INVE35757 |
| Hydrozoa, Filifera |
Turritopsis dohrnii |
EU272596 |
EU272638 |
MHNG INVE29753 |
| Hydrozoa, Leptothecata |
Abietinaria filicula |
EU272540 |
EU272600 |
MHNG INVE29947 |
| Hydrozoa, Leptothecata |
Aglaophenia tubiformis |
EU272543 |
EU272601 |
MHNG INVE29967 |
| Hydrozoa, Leptothecata |
Amphisbetia minima |
EU272544 |
EU272602 |
MHNG INVE25071 |
| Hydrozoa, Leptothecata |
Anthohebella parasitica |
EU272545 |
EU272603 |
MHNG INVE29762 |
| Hydrozoa, Leptothecata |
Clytia noliformis |
EU272554 |
EU272611 |
|
| Hydrozoa, Leptothecata |
Halecium muricatum |
EU272565 |
EU272619 |
MHNG INVE29028 |
| Hydrozoa, Leptothecata |
Halopteris minuta |
EU272567 |
EU272620 |
MHNG INVE25073 |
| Hydrozoa, Leptothecata |
Melicertum octocostatum |
EU272575 |
AY920757 |
USNM 1073342 |
| Hydrozoa, Leptothecata |
Octophialucium indicum |
EU272577 |
EU272626 |
MHNG INVE29970 |
| Hydrozoa, Leptothecata |
Plumularia setacea |
EU272583 |
EU272628 |
MHNG INVE36298 |
| Hydrozoa, Siphonophorae |
Agalma elegans |
EU272542 |
AY937313 |
YPM 35029 |
| Hydrozoa, Siphonophorae |
Apolemia sp. |
EU272546 |
AY937331 |
YPM 35090 |
| Hydrozoa, Siphonophorae |
Cordagalma cordiforme |
EU272555 |
AY937317 |
YPM 35032 |
| Hydrozoa, Siphonophorae |
Halistemma rubrum |
EU272566 |
AY937358 |
YPM 35359 |
| Hydrozoa, Siphonophorae |
Nanomia bijuga |
EU272576 |
AY937338 |
YPM 35043 |
| Hydrozoa, Siphonophorae |
Nectopyramis sp. |
AY026377 |
AF358068 |
|
| Hydrozoa, Siphonophorae |
Physophora hydrostatica |
EU272582 |
AY937342 |
YPM 35046 |
| Hydrozoa, Siphonophorae |
Sulculeolaria quadrivalvis |
EU272594 |
AY937353 |
YPM 35357 |
| Hydrozoa, Stylasteridae |
Crypthelia cryptotrema |
EU272558 |
EU272641 |
USNM1027758 |
| Hydrozoa, Stylasteridae |
Lepidopora microstylus |
EU272572 |
EU272644 |
USNM1027724 |
| Hydrozoa, Stylasteridae |
Pseudocrypthelia pachypoma |
EU272589 |
EU272643 |
USNM1027728 |
| Hydrozoa, Stylasteridae |
Adelopora crassilabrum |
EU272541 |
EU272642 |
USNM1027760 |
| Hydrozoa, Trachylina |
Limnocnida tanganyicae |
AY920795 |
AY920755 |
|
| Hydrozoa, Trachylina |
Maeotias marginata |
EU247810 |
||
| Hydrozoa, Trachylina |
Olindias phosphorica |
EU247808 |
AY920753 |
MHNG INVE29811 |
| Scyphozoa, Coronatae |
Atolla vanhoeffeni |
AY026368 |
AF100942 |
|
| Scyphozoa, Coronatae |
Nausithoe rubra |
AY920776 |
AF358095 |
|
| Scyphozoa, Rhizostomea |
Catostylus sp. |
AY920777 |
AF358100 |
|
| Scyphozoa, Semaeostomeae |
Chrysaora melanaster |
AY920780 |
AF358099 |
|
| Scyphozoa, Semaeostomeae |
Aurelia sp. |
EU272547 |
EU272604 |
|
| Scyphozoa, Semaeostomeae |
Phacellophora camtschatica |
AY920778 |
AF358096 |
|
| Staurozoa, Stauromedusae |
Craterolophus convolvulus |
AY920781 |
AY845344 |
|
| Staurozoa, Stauromedusae |
Haliclystus octoradiatus |
AH014894 |
AY845346 |
|
| Staurozoa, Stauromedusae |
Haliclystus sanjuanensis |
AY920782 |
AF358102 |
|
| Myxozoa |
||||
| Malacosporea |
Buddenbrockia plumatellae |
AJ937883 |
||
| Myxosporea |
Henneguya salminicola |
AY302726 |
||
| Myxosporea |
Kudoa trifolia |
AM490336 |
AM183300 |
|
| Myxosporea |
Kudoa unicapsula |
AM490335 |
AM490334 |
|
| Myxosporea |
Myxobolus cerebralis |
EF370481 |
||
| Myxosporea |
Myxobolus dogieli |
EU003978 |
||
| Myxosporea |
Parvicapsula limandae |
EF429096 |
||
| Outgroups |
||||
| Choanoflagellida |
||||
| Codonosigidae |
Monosiga brevicollis |
AY026374 |
AF084618 |
|
| Salpingoecidae |
Salpingoeca infusionum |
AY026380 |
AF100941 |
|
| Ctenophora, |
||||
| Cyclocoela |
Beroe ovata |
AY026369 |
AF293694 |
|
| Cyclocoela |
Mnemiopsis leidyi |
AY026373 |
AF293700 |
|
| Typhlocoela |
Pleurobrachia bachei |
AY026378 |
AF293677 |
|
| Fungi |
||||
| Ascomycota |
Candida albicans |
X70659 |
X53497 |
|
| Ascomycota |
Saccharomyces cerevisiae |
J01355 |
M27607 |
|
| Basidiomycota |
Tricholoma matsutake |
U62964 |
U62538.1 |
|
| Mucoromycotina |
Mucor racemosus |
AJ271061 |
AJ271061 |
|
| Porifera, |
||||
| Calcarea |
Leucosolenia sp. |
AY026372 |
AF100945 |
|
| Demospongia |
Mycale fibrexilis |
AY026376 |
AF100946 |
|
| Demospongia |
Suberites ficus |
AY026381 |
AF100947 |
|
|
A complete list of sequences used in the analyses with GenBank accession numbers and museum voucher numbers. Bold numbers indicate new sequences generated for this study. KUMIP = University of Kansas Museum of Invertebrate Paleontology, KUNHM = University of Kansas Natural History Museum, MHNG = Muséum d'histoire naturelle de Genève, YPM = Yale Peabody Museum, USNM = US National Museum of Natural History. | ||||
Evans et al. BMC Evolutionary Biology 2008 8:139 doi:10.1186/1471-2148-8-139 |
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