Table 1 |
||||
|
Taxon and sequence list |
||||
|
Accession numbers |
||||
|
|
||||
|
Higher classification |
Taxon ID |
28S |
18S |
Voucher |
|
|
||||
|
Bilateria |
||||
|
Annelida |
Proceraea cornuta |
|||
|
Annelida |
Urechis caupo |
|||
|
Arthropoda |
Limulus polyphemus |
|||
|
Arthropoda |
Tenebrio sp./Tenebrio molitor |
|||
|
Brachiopoda |
Phoronis vancouverensis |
|||
|
Chordata |
Oncorhynchus sp./O. kisutch |
|||
|
Chordata |
Petromyzon marinus |
|||
|
Chordata |
Raja schmidti |
|||
|
Chordata |
Triakis semifasciata |
|||
|
Echinodermata |
Strongylocentrotus purpuratus |
|||
|
Hemichordata |
Cephalodiscus gracilis |
|||
|
Hemichordata |
Harrimania sp. |
|||
|
Hemichordata |
Ptychodera flava |
|||
|
Hemichordata |
Ptychoderidae |
|||
|
Hemichordata |
Saccoglossus kowalevskii |
|||
|
Kinorhyncha |
Pycnophyes sp.Tjarno |
|||
|
Mollusca |
Parvicardium minimum |
|||
|
Mollusca |
Placopecten magellanicus |
|||
|
Nematoda |
Caenorhabditis elegans |
|||
|
Nematomorpha |
Chordodes morgani |
|||
|
Nemertea |
Amphiporus sp. |
|||
|
Nemertodermatida |
Meara stichopi |
|||
|
Onychophora |
Peripatus sp. |
|||
|
Platyhelminthes |
Diclidophora denticulata |
|||
|
Platyhelminthes |
Stenostomum leucops |
|||
|
Platyhelminthes |
Stylochus zebra |
|||
|
Priapulida |
Priapulus caudatus |
|||
|
Sipuncula |
Phascolopsis gouldii |
|||
|
Tardigrada |
Milnesium.sp.\M. tardigradum |
|||
|
Urochordata |
Styela plicata |
|||
|
Urochordata |
Thalia democratica |
|||
|
Cnidaria |
||||
|
Polypodiozoa |
Polypodium (Host: Acipenser ruthenus) |
|||
|
Polypodiozoa |
Polypodium (Host: Polyodon spathula) |
|||
|
Polypodiozoa |
Polypodium (Host:Scaphirhynchus platorynchus) |
|||
|
Anthozoa, Antipatharia |
Antipathes galapagensis |
|||
|
Anthozoa, Scleractinia |
Montastraea franksi |
|||
|
Cubozoa, Carybdeidae |
Carybdea rastonii |
|||
|
Cubozoa, Carybdeidae |
Darwin carybdeid sp. |
|||
|
Cubozoa, Carybdeidae |
Tripedalia cystophora |
|||
|
Cubozoa, Chirodropidae |
Chironex fleckeri |
|||
|
Cubozoa, Chirodropidae |
Chiropsalmus sp. |
|||
|
Hydrozoa, Capitata |
Dipurena ophiogaster |
KUNHM 2803 |
||
|
Hydrozoa, Capitata |
Ectopleura dumortieri |
|||
|
Hydrozoa, Capitata |
Euphysora bigelowi |
KUNHM 2829 |
||
|
Hydrozoa, Capitata |
Moerisia sp. |
|||
|
Hydrozoa, Capitata |
Pennaria disticha |
|||
|
Hydrozoa, Capitata |
Polyorchis penicillatus |
|||
|
Hydrozoa, Capitata |
Porpita sp. |
|||
|
Hydrozoa, Capitata |
Ralpharia gorgoniae |
KUNHM 2778 |
||
|
Hydrozoa, Capitata |
Scrippsia pacifica |
|||
|
Hydrozoa, Capitata |
Solanderia ericopsis |
MHNG INVE29593 |
||
|
Hydrozoa, Capitata |
Velella sp. |
|||
|
Hydrozoa, Capitata |
Zanclea prolifera |
KUNHM 2793 |
||
|
Hydrozoa, Capitata |
Zyzzyzus warreni |
KUNHM 2777 |
||
|
Hydrozoa, Capitata |
Candelabrum cocksii |
MHNG INVE29531 |
||
|
Hydrozoa, Capitata |
Cladocoryne floccosa |
|||
|
Hydrozoa, Filifera |
Bimeria vestita |
|||
|
Hydrozoa, Filifera |
Bougainvillia carolinensis |
|||
|
Hydrozoa, Filifera |
Brinckmannia hexactinellidophila |
MHNG INVE38148 |
||
|
Hydrozoa, Filifera |
Clava multicornis |
|||
|
Hydrozoa, Filifera |
Clavactinia gallensis |
MHNG INVE33470 |
||
|
Hydrozoa, Filifera |
Cordylophora caspia |
|||
|
Hydrozoa, Filifera |
Corydendrium sp. |
KUNHM 2764 |
||
|
Hydrozoa, Filifera |
Dicoryne conybearei |
MHNG INVE32949 |
||
|
Hydrozoa, Filifera |
Eudendrium.racemosum |
|||
|
Hydrozoa, Filifera |
Fabienna sphaerica |
|||
|
Hydrozoa, Filifera |
Garveia annulata/Garveia sp. |
KUNHM 2860 |
||
|
Hydrozoa, Filifera |
Hydra circumcincta |
|||
|
Hydrozoa, Filifera |
Hydractinia symbiolongicarpus |
|||
|
Hydrozoa, Filifera |
Hydrichthella epigorgia |
KUNHM 2665 |
||
|
Hydrozoa, Filifera |
Hydrichthys boycei |
MHNG INVE37417 |
||
|
Hydrozoa, Filifera |
Koellikerina fasciculata |
|||
|
Hydrozoa, Filifera |
Leuckartiara octona |
|||
|
Hydrozoa, Filifera |
Lizzia blondina |
|||
|
Hydrozoa, Filifera |
Pachycordyle pusilla |
MHNG INVE32953 |
||
|
Hydrozoa, Filifera |
Pandea sp. |
|||
|
Hydrozoa, Filifera |
Podocoryne carnea |
|||
|
Hydrozoa, Filifera |
Proboscidactyla ornata |
KUNHM 2767 |
||
|
Hydrozoa, Filifera |
Pruvotella grisea |
MHNG INVE34436 |
||
|
Hydrozoa, Filifera |
Rathkea octopunctata |
KUMIP 314321 |
||
|
Hydrozoa, Filifera |
Rhizogeton nudus |
MHNG INVE35757 |
||
|
Hydrozoa, Filifera |
Turritopsis dohrnii |
MHNG INVE29753 |
||
|
Hydrozoa, Leptothecata |
Abietinaria filicula |
MHNG INVE29947 |
||
|
Hydrozoa, Leptothecata |
Aglaophenia tubiformis |
MHNG INVE29967 |
||
|
Hydrozoa, Leptothecata |
Amphisbetia minima |
MHNG INVE25071 |
||
|
Hydrozoa, Leptothecata |
Anthohebella parasitica |
MHNG INVE29762 |
||
|
Hydrozoa, Leptothecata |
Clytia noliformis |
|||
|
Hydrozoa, Leptothecata |
Halecium muricatum |
MHNG INVE29028 |
||
|
Hydrozoa, Leptothecata |
Halopteris minuta |
MHNG INVE25073 |
||
|
Hydrozoa, Leptothecata |
Melicertum octocostatum |
USNM 1073342 |
||
|
Hydrozoa, Leptothecata |
Octophialucium indicum |
MHNG INVE29970 |
||
|
Hydrozoa, Leptothecata |
Plumularia setacea |
MHNG INVE36298 |
||
|
Hydrozoa, Siphonophorae |
Agalma elegans |
YPM 35029 |
||
|
Hydrozoa, Siphonophorae |
Apolemia sp. |
YPM 35090 |
||
|
Hydrozoa, Siphonophorae |
Cordagalma cordiforme |
YPM 35032 |
||
|
Hydrozoa, Siphonophorae |
Halistemma rubrum |
YPM 35359 |
||
|
Hydrozoa, Siphonophorae |
Nanomia bijuga |
YPM 35043 |
||
|
Hydrozoa, Siphonophorae |
Nectopyramis sp. |
|||
|
Hydrozoa, Siphonophorae |
Physophora hydrostatica |
YPM 35046 |
||
|
Hydrozoa, Siphonophorae |
Sulculeolaria quadrivalvis |
YPM 35357 |
||
|
Hydrozoa, Stylasteridae |
Crypthelia cryptotrema |
USNM1027758 |
||
|
Hydrozoa, Stylasteridae |
Lepidopora microstylus |
USNM1027724 |
||
|
Hydrozoa, Stylasteridae |
Pseudocrypthelia pachypoma |
USNM1027728 |
||
|
Hydrozoa, Stylasteridae |
Adelopora crassilabrum |
USNM1027760 |
||
|
Hydrozoa, Trachylina |
Limnocnida tanganyicae |
|||
|
Hydrozoa, Trachylina |
Maeotias marginata |
|||
|
Hydrozoa, Trachylina |
Olindias phosphorica |
MHNG INVE29811 |
||
|
Scyphozoa, Coronatae |
Atolla vanhoeffeni |
|||
|
Scyphozoa, Coronatae |
Nausithoe rubra |
|||
|
Scyphozoa, Rhizostomea |
Catostylus sp. |
|||
|
Scyphozoa, Semaeostomeae |
Chrysaora melanaster |
|||
|
Scyphozoa, Semaeostomeae |
Aurelia sp. |
|||
|
Scyphozoa, Semaeostomeae |
Phacellophora camtschatica |
|||
|
Staurozoa, Stauromedusae |
Craterolophus convolvulus |
|||
|
Staurozoa, Stauromedusae |
Haliclystus octoradiatus |
|||
|
Staurozoa, Stauromedusae |
Haliclystus sanjuanensis |
|||
|
Myxozoa |
||||
|
Malacosporea |
Buddenbrockia plumatellae |
|||
|
Myxosporea |
Henneguya salminicola |
|||
|
Myxosporea |
Kudoa trifolia |
|||
|
Myxosporea |
Kudoa unicapsula |
|||
|
Myxosporea |
Myxobolus cerebralis |
|||
|
Myxosporea |
Myxobolus dogieli |
|||
|
Myxosporea |
Parvicapsula limandae |
|||
|
Outgroups |
||||
|
Choanoflagellida |
||||
|
Codonosigidae |
Monosiga brevicollis |
|||
|
Salpingoecidae |
Salpingoeca infusionum |
|||
|
Ctenophora, |
||||
|
Cyclocoela |
Beroe ovata |
|||
|
Cyclocoela |
Mnemiopsis leidyi |
|||
|
Typhlocoela |
Pleurobrachia bachei |
|||
|
Fungi |
||||
|
Ascomycota |
Candida albicans |
|||
|
Ascomycota |
Saccharomyces cerevisiae |
|||
|
Basidiomycota |
Tricholoma matsutake |
|||
|
Mucoromycotina |
Mucor racemosus |
|||
|
Porifera, |
||||
|
Calcarea |
Leucosolenia sp. |
|||
|
Demospongia |
Mycale fibrexilis |
|||
|
Demospongia |
Suberites ficus |
|||
|
|
||||
|
A complete list of sequences used in the analyses with GenBank accession numbers and museum voucher numbers. Bold numbers indicate new sequences generated for this study. KUMIP = University of Kansas Museum of Invertebrate Paleontology, KUNHM = University of Kansas Natural History Museum, MHNG = Muséum d'histoire naturelle de Genève, YPM = Yale Peabody Museum, USNM = US National Museum of Natural History. |
||||
|
Evans et al. BMC Evolutionary Biology 2008 8:139 doi:10.1186/1471-2148-8-139 |
||||
