Table 6

Results of the analysis of adaptive sequence evolution for individual branches of the clade 2 protist-type lysozyme tree.

Branch

Free-ratio

2-ratio



dN/dS

Bootstrap

dN/dS

Lc

Pd


A

0.112

100

0.128

0.013

0.9110

B

0.080

100

0.085

0.879

0.3483

C

0.085

100

0.058

1.548

0.2134

D

0.020

100

0.019

10.800

0.0010**,##

E

0.132

96

0.157

0.149

0.6996

F

> 999

83

> 999

3.322

0.0684

G

0.050

100

0.048

2.752

0.0972

H

0.063

100

0.062

0.903

0.3420

I

0.157

100

0.145

0.302

0.5825

J

0.079

97

0.047

1.152

0.2832

K

0.170

95

0.149

0.089

0.7652

L

0.088

100

0.147

0.065

0.7991

M

0.435

95

0.440

9.683

0.0019**,##

N

0.237

97

0.336

2.723

0.0989

O

0.482

59

1.088

2.572

0.1088


Branch names are as depicted in Fig. 8B. Methods and abbreviations as in Table 3. The optimal free-ratio model had a likelihood of ln L = -3525.65 and the 1-ratio null model for the LRT comparison had ln L = -3555.98.

Schulenburg and Boehnisch BMC Evolutionary Biology 2008 8:114   doi:10.1186/1471-2148-8-114

Open Data