Table 4

Results of the analysis of adaptive sequence evolution for individual branches of the whole protist-type lysozyme tree.

Branch

Free-ratio

2-ratio



dN/dS

Bootstrap

dN/dS

L

P


A

0.024

91

0.021

3.167

0.0751

B

0.057

80

0.056

1.064

0.3024

C

0.080

96

0.049

1.550

0.2131

D

0.129

68

0.023

2.224

0.1359

E

0.365

61

0.002

1.746

0.1864

F

0.049

100

0.051

0.726

0.3942

G

0.013

100

< 0.001

7.951

0.0048#

H

0.022

100

0.018

3.961

0.0466

I

0.085

73

0.019

0.342

0.5588

J

0.853

41

> 999

11.627

0.0006**,##

K

0.094

100

0.116

0.087

0.7680

L

0.131

100

0.141

0.399

0.5278

M

0.112

100

0.172

0.412

0.5212

N

0.613

62

> 999

4.752

0.0293

O

> 999

97

> 999

6.263

0.0123

P

0.303

77

> 999

5.772

0.0163

Q

0.177

100

0.237

2.696

0.1006

R

0.017

99

0.027

1.360

0.2435

S

0.087

100

0.077

0.146

0.7022

T

0.173

97

0.180

0.280

0.5964

U

0.177

90

0.214

0.447

0.5039

V

0.029

100

0.029

3.183

0.0744

W

0.171

85

0.073

0.100

0.7524

X

3.860

59

> 999

3.589

0.0582

Y

0.740

58

> 999

8.385

0.0038#

Z

2.148

47

17.722

1.898

0.1683

AA

0.016

93

0.027

0.665

0.4148

AB

0.451

54

8.852

1.815

0.1779

AC

0.072

98

0.137

0.050

0.8228

AD

0.074

100

0.056

0.836

0.3605

AE

0.027

100

0.025

2.859

0.0909

AF

0.091

95

0.102

0.000

0.9929

AG

0.073

100

0.106

0.005

0.9447

AH

0.046

100

0.055

1.221

0.2691

AI

0.039

100

0.024

2.779

0.0955

AJ

< 0.001

99

< 0.001

10.084

0.0015*,##

AK

0.236

95

0.287

1.944

0.1632

AL

> 999

90

> 999

4.708

0.0300

AM

0.366

70

0.581

2.098

0.1475

AN

0.266

94

0.361

3.621

0.0570

AO

0.382

71

0.982

1.682

0.1947

AP

0.188

81

0.080

0.241

0.6235

AQ

0.713

53

> 999

3.275

0.0703


Branch names are as in Fig. 6B. Methods and abbreviations as in Table 3. The optimal free-ratio model had a likelihood of ln L = -5556.07 and the 1-ratio null model for LRT comparison had ln L = -5646.46.

Schulenburg and Boehnisch BMC Evolutionary Biology 2008 8:114   doi:10.1186/1471-2148-8-114

Open Data