Additional file 2.

RMSD nodal distance between each site-stripped MHP phylogeny and the ideal phylogeny. This table summarizes the results of the statistical comparison (RMSD) of the ideal phylogeny with each site stripped phylogeny. Values closer to zero are closer to complete agreement, the alignment with site categories 8 through to 6 removed, is the phylogeny closest to ideal.

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Loughran et al. BMC Evolutionary Biology 2008 8:101   doi:10.1186/1471-2148-8-101