Table 1

Pigment synthesis genes in human and teleost fish
gene
 human
 zebrafish
 medaka
 stickleback
 Takifugu
 Tetraodon
 other teleosts
tyr#
 chr 11
 LG 15 (sdy)
 LG 13 (i-b/-1/-4/-6)
 chr I
 scaf 172
 scaf 12050
 Omy, Oni and other cichlids


-
 chr 14
 chr VII
 scaf 176
 chr 7
 Eha, Gpe, Ipu, Omy, Oni
tyrp1#
 chr 9
 LG 7*
 LG 18
 chr VII
 scaf 2235
 scaf 14681
 Cau, Omy, Oni, Ppr, Ssa


LG 1
 chr 1
 chr IX
 -
 scaf 13631ψ
 Man, Ppr
dct
 chr 13
 LG 9
 chr 21
 chr XVI
 scaf 103
 chr 2
 Cau, Ipu, Omy, Ssa
silv#
 chr 12
 LG 11 (fdv)
 chr 5
 scaf 27
 scaf 47
 chr 11
 Hsp, Omy, Ppr


chr 23
 chr 7
 chr XII
 scaf 304
 chr 9
 Abu, Omy, Ssa
oca2
 chr 15
 chr 6
 LG 4 (i-3)
 chr VIII
 scaf 13
 chr 1
 Ame
aim1
 chr 5
 LG 21
 LG 12 (b)
 chr XIV
 scaf 44
 chr 4
 Omy, several cichlids
slc24a5
 chr 15
 LG 18 (gol)
 chr 3
 chr II
 scaf 1
 chr 5
 Ppr
gchIa
 chr 14
 LG 17*
 scaf445
 chr II
 scaf 1
 scaf 15099
 Hhi, Omy, Ppr
gchIb
 -
 LG 12*
 chr 19
 chr V
 scaf 952
 scaf 7971
 Fhe
gchIc
 -
 -
 -
 chr VIII
 scaf 208
 chr 1
 Sau
gchfr
 chr 15
 chr 17
 chr 22
 chr XV
 scaf 23
 chr 10
 Fhe, Omy, Ssa
pts
 chr 11
 chr 12
 chr 19
 chr V
 scaf 3
 scaf 14338
 Omy, Pfl, Ppr, Pre, Ssa
spr#
 chr 2
 chr 5
 chr 10
 chr XIV
 scaf 106
 scaf 21575
 Ipu, Omy, Pfl, Pol, Ppr, Ssa


chr 8
 -
 chr XIII
 scaf 11
 -
 -
xdh
 chr 2
 LG 22
 chr 2
 chr I
 scaf 57
 chr 3
 Fhe, Sch, Ssa
clot (txnl5)
 chr 17
 chr 15
 chr 13
 chr I
 scaf 271
 chr 16
 Cca, Ipu, Omy, Ppr, Ssa
pcbd1
 chr 10
 chr 13
 chr 14
 chr VI
 scaf 53, scaf 178ψ
 chr 17
 Fhe, Hhi, Ipu, Omy, Pfl
pcbd2
 chr 5
 chr 21
 chr 15
 scaf 324
 scaf 71
 chr 7
 Man, Omy, Ppr, Ssa
dhpr#
 chr 4
 chr 14
 chr 10
 chr IV
 scaf 70
 chr 20
 Cca, Omy, Ppr, Psa, Ssa, Hsp


chr1
 -
 -
 -
 -
 Omy, Ppr, Ssa
pam
 chr 13
 LG 9 (esr)
 chr 21
 chr XVI
 scaf 31
 chr 2
 Abu, Hhi, Omy, Ppr

Genomic locations are given as linkage groups (LG) if genes have been mapped or as chromosomes (chr) or scaffolds (scaf) as obtained from Ensembl genome assemblies [77]. Three zebrafish genes have been mapped with radiation hybrid panel in the present study (*). Names of mutants from zebrafish and medaka are given in brackets. ψ indicates pseudogenes. # indicates duplications based on the fish-specific genome duplication, lineage-specific duplications are underlined. Scientific names of other teleosts are abbreviated as follows: Abu: Astatotilapia burtoni (haplochromine cichlid); Ame: Astyanax mexicanus (Mexican tetra); Cau: Carassius auratus (goldfish); Cca: Cyprinus carpio (common carp); Eha: Elops hawaiensis (Hawaiian ladyfish); Fhe: Fundulus heteroclitus (killifish); Gpe: Gnathonemus petersii (elephantnose fish); Hsp: Haplochromis spec. (haplochromine cichlid); Hhi: Hippoglossus hippoglossus (Atlantic halibut); Ipu: Ictalurus punctatus (channel catfish); Man: Misgurnus anguillicaudatus (oriental weatherfish); Omy: Oncorhynchus mykiss (rainbow trout); Oni: Oreochromis niloticus (Nile tilapia); Pfl: Platichthys flesus (European flounder); Pol: Paralichthys olivaceus (bastard halibut); Ppr: Pimephales promelas (fathead minnow); Pre: Poecilia reticulata (guppy); Psa: Pomatomus saltatrix (bluefish); Sau: Sparus aurata (gilthead seabream); Sch: Siniperca chuatsi (Chinese perch); Ssa: Salmo salar (Atlantic salmon).

Braasch et al. BMC Evolutionary Biology 2007 7:74   doi:10.1186/1471-2148-7-74