Additional file 2.
Alignments of the overlapping regions of the 1.1 kb PCR products to muskox control region sequences from GenBank. Long PCR fragments are aligned to short PCR fragments from modern and Pleistocene muskoxen, as well as all Ovibos moschatus control region sequences retrieved from GenBank and the serow control region sequence from GenBank. Names describe muskox individual (C or E), tissue of origin (H for hair, B for blood), and clone number. For additional sequences included, see Additional file 4 for haplotype descriptions. Clones CBL.10 and CHL.5 aligned very poorly at the 5'-end of the sequence and were trimmed. The sequences extend beyond what is shown. Nucleotides identical to the first sequence are indicated by a dot and gaps/missing data by a dash. Long fragment sequences were submitted to GenBank (GenBank: EF566449–EF566462).
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Kolokotronis et al. BMC Evolutionary Biology 2007 7:67 doi:10.1186/1471-2148-7-67