Table 2 |
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|
Genetic variability parameters of Tnt1-like sequences of Solanum wild and cultivated genotypes |
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|
code |
Domest. |
total |
unique |
size bp |
π JC |
I |
II |
III |
premature |
no stop/cod |
|
|
|
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|
bre |
wild |
25 |
13 |
52% |
456(± 7) |
0,057 |
13 |
- |
- |
1 |
5 |
|
cmm |
3 |
3 |
100% |
423(± 5) |
0,093 |
1 |
2 |
- |
- |
- |
|
|
chc |
1 |
1 |
100% |
428 |
- |
1 |
- |
- |
- |
- |
|
|
tar |
15 |
9 |
60% |
422(± 14) |
0,038 |
1 |
8 |
- |
1 |
- |
|
|
mga |
17 |
10 |
58% |
439(± 19) |
0,171 |
6 |
3 |
1 |
- |
- |
|
|
sat |
7 |
6 |
85% |
440(± 4) |
0,069 |
4 |
2 |
- |
- |
- |
|
|
inf |
23 |
10 |
43% |
428(± 9) |
0,053 |
4 |
6 |
- |
2 |
- |
|
|
dds |
1 |
1 |
100% |
435 |
- |
1 |
- |
- |
1 |
- |
|
|
lph |
1 |
1 |
100% |
436 |
- |
1 |
- |
- |
- |
- |
|
|
mcd |
2 |
2 |
100% |
428(± 11) |
0,078 |
1 |
1 |
- |
- |
- |
|
|
opl |
2 |
2 |
100% |
419(± 2) |
- |
- |
2 |
- |
1 |
- |
|
|
scr |
12 |
12 |
100% |
463(± 11) |
0,132 |
6 |
5 |
1 |
1 |
1 |
|
|
gou |
3 |
3 |
100% |
430(± 8) |
0,093 |
2 |
1 |
- |
1 |
- |
|
|
ha |
19 |
12 |
63% |
428(± 9) |
0,249 |
2 |
7 |
3 |
- |
- |
|
|
inc |
21 |
11 |
52% |
421(± 4) |
0,041 |
2 |
9 |
- |
3 |
- |
|
|
ktz |
18 |
14 |
77% |
443(± 8) |
0,287 |
7 |
- |
7 |
- |
- |
|
|
oka |
16 |
7 |
43% |
434(± 10) |
0,273 |
2 |
3 |
2 |
- |
- |
|
|
spg |
20 |
9 |
45% |
433(± 7) |
0,055 |
5 |
4 |
- |
3 |
- |
|
|
vrn |
12 |
4 |
27% |
429(± 9) |
0,072 |
2 |
2 |
- |
- |
- |
|
|
Ke |
cult. |
8 |
8 |
100% |
426(± 14) |
0,078 |
2 |
6 |
- |
- |
- |
|
Hu |
4 |
4 |
100% |
421 |
0,026 |
- |
4 |
- |
- |
- |
|
|
Cha |
23 |
17 |
74% |
424(± 7) |
0,064 |
7 |
10 |
- |
- |
- |
|
|
Mo |
29 |
17 |
58% |
423(± 6) |
0,057 |
6 |
11 |
- |
- |
- |
|
|
Tu |
17 |
14 |
82% |
428(± 10) |
0,058 |
8 |
6 |
- |
- |
- |
|
|
acl |
wild |
18 |
7 |
38% |
419(± 19) |
0,191 |
3 |
3 |
1 |
- |
4 |
|
total |
317 |
197 |
62% |
87 |
95 |
15 |
14 |
10 |
|||
|
|
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|
Note. Code refers to the codes use in table 1 for each species and cultivars. Domestication (Domest.) status: wild or cultivated (cult.) genotypes. Total: indicates total number of sequences obtained; unique genotypes: total number of different sequences and percentage; size: average fragment size in bp (size variation); πJC indicates nucleotide diversity with Jukes and Castor's (1969) correction; I, II and III refers to the sequence identity group obtained from the tree presented in figure 3 and numbers in these columns indicates numbers of sequences; premature: refers to number of sequences with premature stop codon and no stop/cod: refers to number of sequences with no stop codon in the RNAseH domain. |
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|
Manetti et al. BMC Evolutionary Biology 2007 7:34 doi:10.1186/1471-2148-7-34 |
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