Table 1

HVR1 haplotypes used in the Figure 2. Haplotype frequency is indicated in brackets when there is more than one.

Haplotype

Taxon

Designation*

Geographic origin

Genbank accession numbers

Author


H01

Loxodonta africana africana

Angola1

Angola

AY741072

Debruyne 2005

H02 (2)

L. a. africana

Botswana1, BOT4

Botswana

AY741074, AF106230

Debruyne 2005, Nyakaana et al. 2002

H03 (3)

L. a. africana, L. a. cyclotis

BOT2, BOT21, DRC4

Botswana, DRC

AF106228, AF106234, AY359275

Nyakaana et al. 2002, Debruyne 2005

H04 (2)

L. a. africana

BOT9, Zimbabwe2

Botswana, Zimbabwe

AF106231, AY741329

Nyakaana et al. 2002, Debruyne 2005

H05

L. a. africana

BOT15

Botswana

AF106232

Nyakaana et al. 2002

H06 (3)

L. a. africana, L. a. cyclotis

BOT16, DRC1, Zimbabwe4

Botswana, DRC, Zimbabwe

AF106233, AY359277, AY742799

Nyakaana et al. 2002, Debruyne 2005

H07 (4)

L. a. cyclotis

Bmbo6, Dja39, CAR3214, CAR394

Cameroon, CAR

AF527653, AF527647

Eggert et al. 2002, this study

H08

L. a. cyclotis

Cameroon1

Cameroon

AY359267

Debruyne 2005

H09 (4)

L. a. cyclotis

Cameroon2, Bmbo1, Bmbo37, NYO0310

Cameroon, Gabon

AY359269, AF527646, AF527649

Debruyne 2005, Eggert et al. 2002, this study

H10 (7)

L. a. cyclotis

Bmbo16, Bmbo43, CAR274, CAR297, Congo2, NN0713, NN2911

Cameroon, CAR, CR

AF527648, AF527650, AY359268

Eggert et al. 2002, Debruyne 2005, this study

H11

L. a. cyclotis

Dja34

Cameroon

AF527651

Eggert et al. 2002

H12 (3)

L. africana, L.a. fricana, L. a. cyclotis

DRC13**, B1, DRC9

DRC, Cameroon

AY741081, AY359279, AF527654,

Debruyne 2005, Eggert et al. 2002

H13 (2)

L. a. africana

B7, Waza15

Cameroon

AF527655, AF527659

Eggert et al. 2002

H14 (3)

L. a. africana

B8, Waza10, Sudan1

Cameroon, Sudan

AF527656, AF527658, AY741073

Eggert et al. 2002, Debruyne 2005

H15 (2)

L. a. africana

Waza27, Mali2

Cameroon, Mali

AF527660, AF527666

Eggert et al. 2002

H16 (4)

L. a. cyclotis

CAR3622, NN059, NN279, NN3014

CAR, CR

This study

H17 (2)

L. a. cyclotis

CAR3315, CAR381

CAR

This study

H18 (4)

L. a. cyclotis

CAR5712, AFE82lan, MDC012, NOG053,

CAR, Gabon

This study

H19

L. a. cyclotis

CAR1

CAR

AY359272

Debruyne 2005

H20

L. a. cyclotis

CAR309

CAR

This study

H21

L. a. cyclotis

CAR3519

CAR

This study

H22 (5)

L. a. africana

Chad1, K68, RVV15, Mole13, WA6

Chad, Ghana

AY741080, AF527643, AF527641, AF527676, AF106243

Eggert et al. 2002, Debruyne 2005, Nyakaana et al. 2002

H23 (10)

L. a. cyclotis

NN3218, Lan027, LOP067, LOP51a14, NOG014, NOG025, NOG026, Mpa01, Mpa028, RAB0113

RC, Gabon

This study

H24

L. a. cyclotis

Congo1

RC

AY359266

Debruyne 2005

H25 (2)

L. a. cyclotis

CKT04a14, RAB275

RC, Gabon

This study

H26

L. a. cyclotis

DRC2

DRC

AY359270

Debruyne 2005

H27 (4)

L. a. africana and L. a. cyclotis

KV8, MF1, MF5, DRC3

Uganda, DRC

AF106206, AF106209, AF106210, AY359271

Nyakaana et al. 2002, Debruyne 2005

H28 (2)

L. a. cyclotis

DRC6, DRC8

DRC

AY359273, AY359274

Debruyne 2005

H29

L. a. cyclotis

DRC5

DRC

AY359276

Debruyne 2005

H30 (2)

L. a. africana

DRC11, AM1

DRC, Kenya

AY741078, AF106217

Nyakaana et al. 2002, Debruyne 2005

H31 (2)

L. africana and L. a. africana

DRC17**, QE13

DRC, Uganda

AY742802, AF106213

Nyakaana et al. 2002, Debruyne 2005

H32 (2)

L. a. cyclotis

IVI1011, RAB067

Gabon

This study

H33 (11)

L. a. cyclotis

Igl032, AFE85Igl, AFE86Igl, AFE88Igl, IVI1012, IVI043, LOA0310, LOP146, Mpa0319, RAB0215, WAK0410

Gabon

This study

H34 (3)

L. a. cyclotis

Lan015, Lan15911, RAB131

Gabon

This study

H35 (5)

L. a. cyclotis

Lan1566, IVI05a6, IVI05b8, RAB032, WAK0817

Gabon

This study

H36

L. a. cyclotis

Lan16014

Gabon

This study

H37 (3)

L. a. cyclotis

Gabon2, LOP0710, PBA023

Gabon

AY359265

Debruyne 2005, this study

H38 (8)

L. a. cyclotis

IVI06b2, Kes0721, Kes0819, LOA068, AFE79LOP, PBA0510, RAB044, RAB1118

Gabon

This study

H39 (4)

L. a. cyclotis

Kes0211, Kes0314, Kes0517, PBA0714

Gabon

This study

H40

L. a. cyclotis

Gabon1

Gabon

AY359278

Debruyne 2005

H41

L. a. cyclotis

NOG0810

Gabon

This study

H42

L. a. cyclotis

PBA0612

Gabon

This study

H43

L. a. cyclotis

IVI05a5

Gabon

This study

H44 (3)

L. a. cyclotis

Bia3, Bia69, Liberia1

Ghana, Liberia

AF527677, AF527680, AY741079

Eggert et al 2002, Debruyne 2005

H45

L. a. cyclotis

Bia48

Ghana

AF527678

Eggert et al 2002

H46 (6)

L. a. cyclotis and L. a. africana

Bia64, RVV22, Mole9, WA3, WA14, Mali7

Ghana, Mali

AF527679, AF527642, AF527675, AF106242, AF106245, AF527667

Eggert et al 2002, Nyakaana et al 2002

H47 (2)

L. a. africana

Mole3, Mali14

Ghana, Mali

AF527674, AF527668

Eggert et al 2002

H48

L. a. africana

Mole33

Ghana

AF527683

Eggert et al 2002

H49 (2)

L. a. cyclotis

Tai6, Tai17

Ivory Coast

AF527670, AF527671

Eggert et al 2002

H50 (2)

L. a. cyclotis

Tai19, Tai29

Ivory Coast

AF527672, AF527673

Eggert et al 2002

H51

L. a. africana

IvoryCoast1

Ivory Coast

AY741327

Debruyne 2005

H52 (2)

L. a. africana

SouthAfrica3, Zimbabwe1

South Africa, Zimbabwe

AY741320, AY741321

Debruyne 2005

H53

L. a. africana

MM4

Kenya

AF106214

Nyakaana et al 2002

H54

L. a. africana

MM19

Kenya

AF106215

Nyakaana et al 2002

H55

L. a. africana

MM20

Kenya

AF106216

Nyakaana et al 2002

H56

L. a. africana

AM2

Kenya

AF106218

Nyakaana et al 2002

H57

L. a. africana

AM10

Kenya

AF106219

Nyakaana et al 2002

H58

L. a. africana

AM12

Kenya

AF106220

Nyakaana et al 2002

H59

L. a. africana

SA8

Kenya

AF106221

Nyakaana et al 2002

H60

L. a. africana

Mali28

Mali

AF527669

Eggert et al 2002

H61

L. a. africana

Mozambique1

Mozambic

AY741076

Debruyne 2005

H62 (5)

L. a. africana

Namibia1, Addo5, Uganda1, QE1, Zimbabwe10

Namibia, South Africa, Uganda, Zimbabwe

AY741325, AF527682, AF106211, AY741323, AY742800

Nyakaana et al 2002, Eggert et al 2002, Debruyne 2005

H63

L. a. africana

KH2

Namibia

AF106239

Nyakaana et al 2002

H64

L. a. africana

Addo1

South Africa

AF527681

Eggert et al 2002

H65

L. a. africana

KG1

South Africa

AF106240

Nyakaana et al 2002

H66 (3)

L. a. africana

KG2, Tanzania2, Zimbabwe7

South Africa, Tanzania, Zimbabwe

AF106241, AY741070, AY741067

Nyakaana et al 2002, Debruyne 2005

H67

L. a. africana

Tanzania1

Tanzania

AY742801

Debruyne 2005

H68 (4)

L. a. africana

QE4, Zambia1, Af9, Af10

Uganda, Zambia, Kenya

AF106212, AY741328, AF527639, AF527640

Nyakaana et al 2002, Eggert et al 2002, Debruyne 2005

H69 (2)

L. a. africana

Uganda2, KV1

Uganda

AY741077, AF106203

Nyakaana et al 2002, Debruyne 2005

H70

L. a. africana

KV2

Uganda

AF106204

Nyakaana et al 2002

H71

L. a. africana

KV7

Uganda

AF106205

Nyakaana et al 2002

H72

L. a. africana

KV17

Uganda

AF106207

Nyakaana et al 2002

H73

L. a. africana

KV28

Uganda

AF106208

Nyakaana et al 2002

H74

L. a. africana

WC2

Namibia

AF106235

Nyakaana et al 2002

H75

L. a. africana

WC4

Namibia

AF106236

Nyakaana et al 2002

H76

L. a. africana

WC6

Namibia

AF106237

Nyakaana et al 2002

H77

L. a. africana

WC13

Namibia

AF106238

Nyakaana et al 2002

H78

L. a. africana

WA11

Ghana

AF106244

Nyakaana et al 2002

H79

L. a. africana

AF8

Kenya

AF527638

Eggert et al 2002

H80

L. a. africana

ZBE1

Zimbabwe

AF106222

Nyakaana et al. 2002

H81

L. a. africana

ZBE2

Zimbabwe

AF106223

Nyakaana et al. 2002

H82

L. a. africana

ZBE3

Zimbabwe

AF106224

Nyakaana et al. 2002

H83

L. a. africana

ZBE4

Zimbabwe

AF106225

Nyakaana et al. 2002

H84

L. a. africana

ZBE5

Zimbabwe

AF106226

Nyakaana et al. 2002

H85

L. a. africana

ZBE6

Zimbabwe

AF106227

Nyakaana et al. 2002

H86

L. a. africana

Zimbabwe3

Zimbabwe

AY741069

Debruyne 2005

H87

L. a. africana

Zimbabwe6

Zimbabwe

AY741071

Debruyne 2005

H88

L. a. africana

Zimbabwe5

Zimbabwe

AY741322

Debruyne 2005


* Original name from each author (Debruyne, 2005; Eggert et al. 2002; Nyakaana et al. 2002; and this study. ** Sample sharing both, forest and savannah haplotypes, according to the author (Debruyne, 2005).

Johnson et al. BMC Evolutionary Biology 2007 7:244   doi:10.1186/1471-2148-7-244

Open Data