Research article
Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data
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* Corresponding author: Bernard Labedan bernard.labedan@igmors.u-psud.fr
1 Institut de Génétique et Microbiologie, CNRS UMR 8621, Bâtiment 400, Université Paris Sud XI, 91405 Orsay Cedex, France
2 Laboratoire de Recherche en Informatique, CNRS UMR 8623, Bâtiment 490, Université Paris Sud XI, 91405 Orsay Cedex, France
BMC Evolutionary Biology 2007, 7:237 doi:10.1186/1471-2148-7-237
Published: 29 November 2007Additional files
Additional File 1:
Table 1. List of the 107 organisms (sorted by their taxonomy) used to compare gene order and to identify all orthologs. The complete taxonomy details and its abbreviated name are given for each studied organism.
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Additional File 2:
Treeortho, an algorithm to identify orthologs in evolutionary trees. The whole annotated Perl code for distinguishing orthologs and paralogs.
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Additional File 3:
A tree of CheC present in euryarchaeota and rooted with bacterial sequences. We used the full set of CheC sequences that are presently available in euryarchaeota.
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Additional File 4:
Figure 2. Structure of SynteBase. The five tables of SynteBase and their respective links are detailed.
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Additional File 5:
Table 2. The longest synteny block in SynteBase. The whole set of adjacent POGs present in Bacillus halodurans and Bacillus subtilis forming this longest synteny block found in comparing the 107 organisms under study in this work.
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