|
Combinations of the three RNase H genes found in the archaeal and bacterial genomes. |
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| Kingdom |
Subdivision |
No. of species |
Classification of RNase H combination |
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|
|
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| Group A |
Group B |
Group C |
Group D |
Group E |
Group F |
Group G |
|||
|
|
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| Archaea |
Crenarchaeota |
5 |
0 |
3 |
0 |
0 |
0 |
2 |
0 |
| Euryarchaeota |
21 |
0 |
6 |
1 |
0 |
0 |
14 |
0 |
|
| Nanoarchaeota |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
|
| Total |
27 |
0 |
9 |
1 |
0 |
0 |
17 |
0 |
|
| Bacteria |
Acidobacteria |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
| Actinobacteria |
20 |
0 |
18 |
1 |
0 |
1 |
0 |
0 |
|
| Aquificae |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
|
| Bacteroidetes |
4 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
|
| Chlamydiae |
7 |
0 |
0 |
7 |
0 |
0 |
0 |
0 |
|
| Chlorobi |
3 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
|
| Chloroflexi |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
|
| Cyanobacteria |
8 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
|
| Deinococcus-Thermus |
3 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
|
| Firmicutes |
49 |
15 |
18 |
7 |
0 |
0 |
0 |
9 |
|
| Fusobacteria |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
|
| Planctomycetes |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
|
| Alphaproteobacteria |
38 |
0 |
38 |
0 |
0 |
0 |
0 |
0 |
|
| Betaproteobacteria |
23 |
0 |
23 |
0 |
0 |
0 |
0 |
0 |
|
| Deltaproteobacteria |
11 |
0 |
11 |
0 |
0 |
0 |
0 |
0 |
|
| Epsilonproteobacteria |
5 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
|
| Gammaproteobacteria |
52 |
0 |
49 |
0 |
0 |
3 |
0 |
0 |
|
| Spirochaetes |
5 |
0 |
4 |
0 |
0 |
1 |
0 |
0 |
|
| Thermotogae |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
|
| Total |
235 |
15 |
189 |
16 |
0 |
6 |
0 |
9 |
|
|
All species were classified on the basis of the RNase H combinations shown in the Venn diagram in Figure 1. | |||||||||
Kochiwa et al. BMC Evolutionary Biology 2007 7:128 doi:10.1186/1471-2148-7-128 |
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