|
Nucleotide composition and AT- and GC-skewnesses of M. sebastis mtDNA sequences for potein-coding, rRNA, tRNA genes and non-coding regions. |
||||||||||
| Nucleotide |
Length (bp) |
A (%) |
C (%) |
T (%) |
G (%) |
A+T (%) |
G+C (%) |
AT-skew |
GC-skew |
|
|
|
||||||||||
| Entire sequence |
14,407 |
29.4 |
9.7 |
41.1 |
19.8 |
70.5 |
29.5 |
-0.17 |
0.34 |
|
| Protein-coding sequencea |
10,254 |
27.8 |
10.1 |
41.8 |
20.3 |
69.6 |
30.4 |
-0.20 |
0.34 |
|
| Codon position |
1st |
3,418 |
29.6 |
9.6 |
37.3 |
23.5 |
66.9 |
33.1 |
-0.12 |
0.42 |
| 2nd |
3,418 |
19.8 |
13.0 |
46.1 |
21.1 |
65.9 |
34.1 |
-0.40 |
0.24 |
|
| 3rd |
3,418 |
34.0 |
7.5 |
42.1 |
16.4 |
76.1 |
23.9 |
-0.10 |
0.37 |
|
| Ribosomal RNA gene sequence |
1,696 |
33.1 |
10.7 |
38.1 |
18.1 |
71.2 |
28.8 |
-0.07 |
0.26 |
|
| Transfer RNA gene sequence |
1,424 |
32.6 |
9.8 |
38.8 |
18.8 |
71.4 |
28.6 |
-0.09 |
0.31 |
|
| Highly repetitive region (HRR) |
472 |
33.9 |
1.9 |
41.5 |
22.7 |
75.4 |
24.6 |
-0.10 |
0.85 |
|
| Unassigned region (UAR) |
348 |
33.7 |
8.6 |
44.5 |
13.2 |
78.2 |
21.8 |
-0.14 |
0.21 |
|
|
aTermination codons were not included. | ||||||||||
Park et al. BMC Evolutionary Biology 2007 7:11 doi:10.1186/1471-2148-7-11 |
||||||||||