Table 1

Fungal organisms used in this analysis are listed. Phylum, sub-phylum and classes are shown. *Gene sets were generated in house.

Species

Phlum

Genes

Citation or sequencing group


Candida albicans

Ascomycota

6,662

[86]

Candida dubliniensis*

Ascomycota

6,027

Sanger Centre

Candida tropicalis*

Ascomycota

6,530

Broad-FGI

Candida parapsilosis*

Ascomycota

4,891

Sanger Centre

Candida lusitaniae*

Ascomycota

5,941

Broad-FGI

Candida guilliermondii*

Ascomycota

5,235

Broad-FGI

Debaryomyces hansenii

Ascomycota

6,896

[49]

Saccharomyces bayanus

Ascomycota

4,492

[87, 88]

Saccharomyces castellii

Ascomycota

4,677

[87]

Saccharomyces cerevisiae

Ascomycota

5,873

[89]

Saccharomyces kudriavzevii

Ascomycota

3,768

[87]

Saccharomyces mikatae

Ascomycota

4,525

[87, 88]

Saccharomyces paradoxus

Ascomycota

4,788

[88]

Candida glabrata

Ascomycota

5,272

[49]

Kluyveromyces lactis

Ascomycota

5,331

[49]

Saccharomyces kluyveri

Ascomycota

2,968

[87]

Kluyveromyces waltii

Ascomycota

5,214

[90]

Ashbya gossypii

Ascomycota

4,718

[91]

Yarrowia lipolytica

Ascomycota

6,666

[49]

Magnaporthe grisea

Ascomycota

11,109

[92]

Neurospora crassa

Ascomycota

10,620

[93]

Podospora anserina *

Ascomycota

10,443

Broad-FGI

Chaetomium globosum

Ascomycota

11,124

Broad-FGI

Trichoderma reesei *

Ascomycota

13,248

JGI-DOE

Fusarium graminearum

Ascomycota

11,640

Broad-FGI

Fusarium verticillioides *

Ascomycota

12,751

Broad-FGI

Aspergillus oryzae

Ascomycota

12,062

NITE (Japan)

Aspergillus nidulans

Ascomycota

9,541

Broad-FGI

Aspergillus fumigatus

Ascomycota

9,923

TIGR and Sanger Centre

Aspergillus terreus *

Ascomycota

10,285

Microbia

Uncinocarpus reesii *

Ascomycota

6,573

Broad-FGI

Histoplasma capsulatum *

Ascomycota

6,605

Broad-FGI

Coccidioides immitis *

Ascomycota

6,622

Broad-FGI

Sclerotinia sclerotiorum

Ascomycota

14,522

Broad-FGI

Botrytis cinerea

Ascomycota

16,448

Broad-FGI

Stagonospora nodorum

Ascomycota

16,597

Broad-FGI

Schizosaccharomyces pombe

Ascomycota

4,991

[94]


Coprinus cinereus*

Basidiomycota

9,452

Broad-FGI

Phanerochaete chrysosporium*

Basidiomycota

10,216

[95]

Cryptococcus neoformans

Basidiomycota

6,594

[96]

Ustilago maydis

Basidiomycota

6,522

Broad-FGI


Rhizopus oryzae

Zygomycota

17,467

Broad-FGI


aBroad-FGI, MIT/Harvard Broad Institute, funded through the Fungal Genome Initiative; JGI-DOE, Department of Energy Joint Genome Institute, Walnut Creek, California; Microbia, Cambridge, Massachusetts; Sanger Caenter, Wellcome Trust Sanger Center, Hinxton, Cambridge, United Kingdom.

Fitzpatrick et al. BMC Evolutionary Biology 2006 6:99   doi:10.1186/1471-2148-6-99

Open Data