Table 3 |
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|
Analysis of markers common to 4 species |
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|
Minimum Flank |
Fixed species |
# blocks |
Variable species 1 (# breaks) |
Variable species 2 (# breaks) |
#joint breaks (β |
Avg #joint breaks in shuffles |
p-value of correlated break (βp) |
|
|
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|
2 |
hg,mus |
403240 |
canis(741) |
rn(1067) |
17 |
10.4 |
0.025 |
|
2 |
hg,rn |
394250 |
canis(709) |
mus(451) |
9 |
3.7 |
0.009 |
|
2 |
canis,mus |
380087 |
hg(352) |
rn(982) |
5 |
5.7 |
0.677 |
|
2 |
canis,rn |
369584 |
hg(332) |
mus(383) |
2 |
1.6 |
0.453 |
|
3 |
hg,mus |
406346 |
canis(599) |
rn(858) |
16 |
7.5 |
0.006 |
|
3 |
hg,rn |
394036 |
canis(566) |
mus(311) |
9 |
2.4 |
0 |
|
3 |
canis,mus |
378865 |
hg(303) |
rn(797) |
5 |
4.4 |
0.423 |
|
3 |
canis,rn |
364549 |
hg(283) |
mus(257) |
2 |
1.1 |
0.31 |
|
|
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|
For Rank differential = 2, the table shows the number of breaks in the variable species, the number of joint breaks, the average number of joint breaks in 1000 random shuffles and the p-value of the joint breaks, for FBP. This is based on greater than 500 bps markers common to Human, Mouse, Rat, and Dog. 4 of the 8 combinations have significant joint breaks. |
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|
Hinsch and Hannenhalli BMC Evolutionary Biology 2006 6:90 doi:10.1186/1471-2148-6-90 |
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