Table 1

Likelihood paramater estimates under the lineage-specific models.

Model

PS-dN

PS-dS

PD-dN

PD-dS

ω0

ωPCD

Sig.


Hox1

One ratio

-707.88

0.0096

Two ratio

-705.14

0.0046

0.1250

P < 0.05

Hox2

One ratio

-800.02

0.0048

0.5967

0.0025

0.3130

0.0080

Two ratio

-798.08

0.0037

0.6313

0.0090

0.6700

0.0058

0.1334

0.05

Hox3

One ratio

-989.99

0.0042

1.1187

0.0003

0.0718

0.0037

Two ratio

-984.72

0.0034

1.3424

0.0050

0

0.0025

A: (0/0)

B: (1.2/0)

D: (1/0)

P << 0.01

Hox4

One ratio

-1573.85

0.0046

0.4348

0.0081

0.7736

0.0105

Two ratio

-1570.91

0.0034

0.4518

0.0151

0.5811

0.0076

0.0259

P < 0.05

Hox5

One ratio

-1015.97

0.0028

0.8522

0.0266

8.1561

0.0033

Two ratio

-1014.86

0.0025

0.9172

0.0279

1.4231

0.0027

0.0196

n.s.

Hox6

One ratio

-1309.19

0.0110

0.7089

0.0242

1.5604

0.0155

Two ratio

-1297.90

0.0096

0.7323

0.0337

0.5095

0.0131

A: (0/0)

B: (3.5/0)

C: (10/0)

P << 0.01

Hox7

One ratio

-701.50

0.0032

0.8238

0

0

0.0039

Two ratio

-696.90

0.0025

1.0950

0.0037

0

0.0023

(0.5/0)

P << 0.01

Hox8

One ratio

-1092.36

0.0055

0.3889

0.0129

0.9167

0.0141

Two ratio

-1089.88

0.0041

0.4206

0.0204

0.4981

0.0098

0.0409

P < 0.05

Hox9

One ratio

-1389.70

0.0042

0.8239

0.0112

2.1879

0.0101

Two ratio

-1377.10

0.0004

0.6179

0.0110

0.0950

0.0054

0.1156

P << 0.01

Hox10

One ratio

-1790.54

0.0118

0.3296

0.0204

0.5690

0.0359

Two ratio

-1783.60

0.0124

0.5521

0.0225

0

0.0224

(4.5/0)

P << 0.01

Hox11

One ratio

-1210.27

0.0054

0.5091

0.0132

1.2578

0.0105

Two ratio

-1206.53

0.0037

0.5339

0.0244

0.8452

0.0070

0.0288

P << 0.01

Hox12

One ratio

-1092.80

0.0144

0.6274

0.0545

2.3793

0.0229

Two ratio

-1092.72

0.0141

0.6378

0.0563

1.8156

0.0222

0.031

n.s.

Hox13

One ratio

-1745.34

0.0171

0.7425

0.0419

1.8193

0.0230

Two ratio

-1745.61

0.0160

0.7516

0.0496

0.9426

0.0212

0.0526

0.063


Parameters that indicate rate accelerations are in bold. ℓ, likelihood of the model. Sig., significance of the model.

Lynch et al. BMC Evolutionary Biology 2006 6:86   doi:10.1186/1471-2148-6-86

Open Data