Table 2 |
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Most common 8-, 9- and 10-mers in Pasteurellacean genome sequences |
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|
Genomea |
%G+C |
Size (Mb) |
Most common 10-merb (number, fold over-rep) |
Most common 9-merb (number, fold over-rep) |
Most common 8-merb (number, fold over-rep) |
|
|
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|
Hin |
38.1 |
1.8 |
AAAGTGCGGT (1115, 429X) |
AAGTGCGGT (1471, 175X) |
AAGTGCGG (1687, 63X) |
|
Aac |
44.4 |
2.1 |
AAAGTGCGGT (1422, 384X) |
AAGTGCGGT (1760, 132X) |
AAGTGCGG (1863, 39X) |
|
Pmu |
40.4 |
2.3 |
AAAGTGCGGT (700, 200X) |
AAGTGCGGT (927, 79X) |
AAGTGCGG (1013, 26X) |
|
Hso |
37 |
2.1 |
AAAGTGCGGT (776, 273X) |
AAGTGCGGT (1216, 135X) |
AAGTGCGG (1446, 51X) |
|
Msu |
42.5 |
2.3 |
AAAGTGCGGT (1297, 333X) |
AAGTGCGGT (1485, 111X) |
AAGTGCGG (1622, 46X) |
|
Apl |
41.4 |
2.2 |
ACAAGCGGTC (429, 187X) |
ACAAGCGGT (742, 68X) |
CAAGCGGT (1361, 36X) |
|
Mha |
41 |
2.7 |
ACAAGCGGTC (506, 181X) |
ACAAGCGGT (973, 70X) |
CAAGCGGT (1636, 48X) |
|
Hduc |
38.2 |
1.76 |
TTTTGCAAAA (106, 9.6X) AATAAGCGGTc (95, 21X) AACAAGCGGTc (85, 31X) |
AATAAAAAA (251, 2.8X) ACAAGCGGTc (199, 23X) |
AAAAATAA (680, 2.3X) CAAGCGGTc (464, 16X) |
|
|
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a Hin: H. influenzae; Aac: A.s actinomycetemcomitans; Pmu: P. multocida; Hso: H. somnus; Msu: M. succiniciproducens; Apl: A. pleuropneumoniae; Mha: M. haemolytica; Hdu: H. ducreyi. b The first number in parentheses is the combined number of copies of the sequence and its reverse complement. The second number in parentheses is the fold over-representation of each repeat compared to a random-sequence genome of the same size and base composition. c The additional entries for H. ducreyi are the copy numbers of the most frequent USS-like repeats. |
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Redfield et al. BMC Evolutionary Biology 2006 6:82 doi:10.1186/1471-2148-6-82 |
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